Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L10
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   2.2  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   2.2  
Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical p...    27   9.0  
U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 438   YPVDIKTSVLVVNGKPKLIALDYCIDT 358
             +P+DI   V + +GKP  I  DY IDT
Sbjct: 13990 HPIDISKVVWLKDGKPLEINKDYSIDT 14016


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 438   YPVDIKTSVLVVNGKPKLIALDYCIDT 358
             +P+DI   V + +GKP  I  DY IDT
Sbjct: 13990 HPIDISKVVWLKDGKPLEINKDYSIDT 14016


>Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical
           protein F14H8.6 protein.
          Length = 695

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 350 DEELNDKSEFRLCYYPHKLSKFTKMLDEAFD 258
           DE  N   E  + +  H++ K TKM+D+A D
Sbjct: 619 DESFNGPIEDYMEHLEHEILKITKMIDQAED 649


>U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical
           protein F45E4.7b protein.
          Length = 505

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 334 IRANSDCATIHINCQNSQKCLTRRSTI 254
           +  NS   +IH NC NS +   RR+ +
Sbjct: 479 VAENSRMFSIHFNCNNSSRLYNRRTCL 505


>U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical
           protein F45E4.7c protein.
          Length = 784

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 334 IRANSDCATIHINCQNSQKCLTRRSTI 254
           +  NS   +IH NC NS +   RR+ +
Sbjct: 758 VAENSRMFSIHFNCNNSSRLYNRRTCL 784


>U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical
           protein F45E4.7a protein.
          Length = 868

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 334 IRANSDCATIHINCQNSQKCLTRRSTI 254
           +  NS   +IH NC NS +   RR+ +
Sbjct: 842 VAENSRMFSIHFNCNNSSRLYNRRTCL 868


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,185,113
Number of Sequences: 27780
Number of extensions: 185817
Number of successful extensions: 398
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)