Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L10
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.54 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 391 KADRVG-LLYRYYPLMKSLMIRANSDCATIHINCQNSQKCLTRRSTIVP 248
           KAD  G  + RY P++K+   R   +     +N Q + KC+  +   +P
Sbjct: 438 KADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLP 486


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 376 QRDQLWFPVHDEYRSL 423
           Q ++ W PV++ Y+SL
Sbjct: 438 QTNKTWLPVNENYKSL 453


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 2   NI*YIDIKIYFVFYILKYLRI 64
           NI YI I  + +FY+L  LRI
Sbjct: 112 NIYYIIILAWALFYLLVSLRI 132


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 2   NI*YIDIKIYFVFYILKYLRI 64
           NI YI I  + +FY+L  LRI
Sbjct: 165 NIYYIIILAWALFYLLVSLRI 185


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 181 SWRKLKIDTHLFGSFLLL*N 122
           SW+++ +   LFG  LLL N
Sbjct: 2   SWQRVFLAVGLFGVLLLLTN 21


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 391 WFPVHDEYRS 420
           W PVH  Y+S
Sbjct: 438 WLPVHTSYKS 447


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 260 DNRAKHHIYADFKSIHEVPVP 198
           DN     +Y +   I ++PVP
Sbjct: 99  DNNYNKKLYYNINYIEQIPVP 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,022
Number of Sequences: 438
Number of extensions: 2485
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)