Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L10
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39590.1 68418.m04795 expressed protein                             29   1.6  
At3g30320.1 68416.m03828 hypothetical protein                          27   6.4  
At5g28500.1 68418.m03469 expressed protein predicted proteins, A...    27   8.5  

>At5g39590.1 68418.m04795 expressed protein
          Length = 542

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 205 GTSWIDLKSAYMWCLARLSNASS 273
           G SW++  S Y+ C  R+SN+ S
Sbjct: 96  GLSWVEFASGYVKCCGRMSNSMS 118


>At3g30320.1 68416.m03828 hypothetical protein
          Length = 695

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 359 LPSDEELNDKSEFRLCYYPHKLSKF--TKMLDEAFDNRA 249
           +P DE    K E+++  +PH++ +F    + D+ + +RA
Sbjct: 630 VPDDEARTRKQEYKVSAFPHQIERFLPIHLEDKVYFSRA 668


>At5g28500.1 68418.m03469 expressed protein predicted proteins,
           Arabidopsis thaliana and Synechocystis sp.
          Length = 434

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 424 KDFGTRRERETKADRVGLLYRYYPLMKSL 338
           +   T  + E  ADR+GL + Y PL+ SL
Sbjct: 70  RSLDTAGKIEVLADRLGLWFEYAPLISSL 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,761
Number of Sequences: 28952
Number of extensions: 162496
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)