Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L09
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1269 + 32272290-32272321,32272924-32274143,32274390-322744...    29   2.4  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    28   5.5  
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888...    28   5.5  
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145...    27   9.7  
05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053     27   9.7  
04_03_0204 + 12643435-12644001                                         27   9.7  
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627...    27   9.7  

>04_04_1269 +
           32272290-32272321,32272924-32274143,32274390-32274433,
           32274883-32275093,32275176-32275413,32275498-32275585,
           32275865-32276020,32276370-32276444
          Length = 687

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 238 PSCACTRNLEPVCASNGVTYNNECMMRCHGGDHLTVVT 351
           PSC C    EPV +++      +  +RC G DH  +++
Sbjct: 302 PSCQCLDGFEPVGSNSSSGCRRKQQLRC-GDDHFVIMS 338


>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 244  CACTRNL-EPVCASNGVTYNNECMMRC 321
            C C + L  P+C   G T+  EC++ C
Sbjct: 1186 CLCLKPLIHPLCCPKGHTFCKECILEC 1212


>03_02_0495 -
           8879612-8880283,8880369-8880608,8880713-8880775,
           8881510-8881620
          Length = 361

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 56  SRVQIHGCISATLTSWHS 3
           +RV+ H CIS+++  WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313


>07_01_1143 -
           10711023-10711884,10713603-10713826,10714253-10714522,
           10715071-10715175
          Length = 486

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 99  PVPVELRHTVEPELEHRTPGSLRQQSEGCGKP 194
           P P     T+ P ++ +  G+L +  EG GKP
Sbjct: 358 PAPPAAERTLYPSMDPQRMGALVESQEGDGKP 389


>05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053
          Length = 576

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 157 GPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRNLEPVCASNGVTYNNE 306
           G  DN   +   Q E +KV+V D+N  P        + V +S   +  NE
Sbjct: 352 GLLDNVADIFYQQQEIHKVVVSDDNKPPEVLFLSGKQTVSSSGEFSSPNE 401


>04_03_0204 + 12643435-12644001
          Length = 188

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 169 CRKDPGVRCSSSGSTVWRNSTGTGC 95
           C   PG  C +    VWR +T  GC
Sbjct: 135 CAAPPGRTCGAYTQVVWRATTQLGC 159


>03_05_0737 +
           27258320-27259007,27259263-27259435,27262684-27262758,
           27262832-27263296
          Length = 466

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/53 (24%), Positives = 31/53 (58%)
 Frame = +1

Query: 109 LNCATQSNPSLSIEHPGPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRNLE 267
           L+ A Q +  +S E P   +++ +  +++ E+++   + N+N P+ A  +N+E
Sbjct: 261 LSAAVQESMVVSPEAPAVEESQAEGHKDEKEASEATEIYNDNQPNVADAQNVE 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,459,654
Number of Sequences: 37544
Number of extensions: 300837
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)