Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L09
(544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative / phos... 33 0.093
At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase sm... 31 0.50
At2g18180.1 68415.m02115 SEC14 cytosolic factor, putative / phos... 31 0.50
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 31 0.66
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr... 30 1.1
At5g26920.1 68418.m03210 calmodulin-binding protein similar to c... 28 3.5
At4g28630.1 68417.m04093 ABC transporter family protein identica... 28 3.5
At3g14850.2 68416.m01876 expressed protein 28 3.5
At3g14850.1 68416.m01877 expressed protein 28 3.5
At5g58080.1 68418.m07268 two-component responsive regulator fami... 27 8.1
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR... 27 8.1
At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1) i... 27 8.1
>At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus; supporting cDNA gi|23463078|gb|BT000834.1|
Length = 543
Score = 33.5 bits (73), Expect = 0.093
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +1
Query: 172 RVKVVENQPESNKVIVVDNNNAP-----SCACTRNLEPVCASNGVTYNNECMMRCHGGDH 336
++ V+ N+ +S + ++D + P SC C N + + G N E M R H GDH
Sbjct: 261 KIHVLGNKYQSKLLEIIDESELPEFLGGSCTCADNGGCMRSDKGPWKNPEIMKRVHNGDH 320
>At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 231
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 204 GFRLVFHNLHS-VVARTRVFDAQARVRLCGAIQQARVAVSDAVATA 70
GF++ N+HS ++ RT+ + + + +C A++ R V DA++ A
Sbjct: 101 GFQIAIENIHSEILLRTKFDEDRLKAIVCDAVEIEREFVCDALSCA 146
>At2g18180.1 68415.m02115 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative contains
Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminussimilar to phosphatidylinositol
transfer-like protein IV (GI:14486707) [Lotus
japonicus];
Length = 558
Score = 31.1 bits (67), Expect = 0.50
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +1
Query: 172 RVKVVENQPESNKVIVVDNNNAP-----SCACTRNLEPVCASNGVTYNNECMMRCHGGDH 336
++ V+ N+ +S + ++D + P SC C N + + G N + M R + GDH
Sbjct: 264 KIHVLGNKYQSKLLEIIDASELPEFLGGSCTCADNGGCMRSDKGPWNNPDIMKRVNNGDH 323
Query: 337 LTVVTHEPCNA*KN 378
+ + NA +N
Sbjct: 324 ICSKRSQADNAGEN 337
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 30.7 bits (66), Expect = 0.66
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 73 GSDGVTYGNPCLLNCATQSNPSLSIEHPGPCDNRVK-VVENQPESNKVIVVDNNNAPSCA 249
GS+ +Y CL + N S P CD K + +NQ ES + N+ P
Sbjct: 230 GSESSSYDVSCLCSYRFCWNCSEDAHSPVDCDTVSKWIFKNQDESENKNWMLANSKPCPE 289
Query: 250 CTRNLEPVCASNGVTYNNEC 309
C R +E N +T + C
Sbjct: 290 CKRPIEKNDGCNHMTCSAPC 309
>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 654
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 265 EPVCASNGVTYNNECMMRCHGGDHLT 342
+PV S+G TY EC+ + G HLT
Sbjct: 271 DPVIVSSGQTYERECIKKWLEGGHLT 296
>At5g26920.1 68418.m03210 calmodulin-binding protein similar to
calmodulin-binding protein TCB60 GI:1698548 from
[Nicotiana tabacum]
Length = 492
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 196 VGFPQPSLCCRKDPGVRCSSSGS 128
VG PQ SL C +DPG + SGS
Sbjct: 301 VGHPQRSLQCPQDPGFVVTCSGS 323
>At4g28630.1 68417.m04093 ABC transporter family protein identical
to half-molecule ABC transporter ATM1 GI:9964117 from
[Arabidopsis thaliana]
Length = 678
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -2
Query: 279 GTDWLQVSCTRTRRCIVVINDNNLIGFRLVFHNLH---SVVARTRVFDAQARVRLCGAIQ 109
G D +V+ R CI V+ + ++ +FHN+H V+DA R + I
Sbjct: 498 GQDIKEVTLESLRSCIGVVPQDTVLFNDTIFHNIHYGNLSATEEEVYDAARRAVIHDTIM 557
Query: 108 QARVAVSDAVATANL 64
+ S AV L
Sbjct: 558 KFPDKYSTAVGERGL 572
>At3g14850.2 68416.m01876 expressed protein
Length = 321
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 82 GVTYGNPCLLNCATQSNPSLSIEHPGPCDNRVKVVE 189
GV +G P +C Q P L ++PG V V++
Sbjct: 223 GVLWGEPAAKSCVGQKEPLLGTKYPGGLPAEVGVLK 258
>At3g14850.1 68416.m01877 expressed protein
Length = 253
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 82 GVTYGNPCLLNCATQSNPSLSIEHPGPCDNRVKVVE 189
GV +G P +C Q P L ++PG V V++
Sbjct: 155 GVLWGEPAAKSCVGQKEPLLGTKYPGGLPAEVGVLK 190
>At5g58080.1 68418.m07268 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 581
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 112 NCATQSNPSLSIEHPGPCDNRV 177
NC +NP +IE+P P DN V
Sbjct: 477 NCTMLNNPFGNIEYPLPADNMV 498
>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1253
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 83 PSLPQTCLISRVQIHGCISATLTSW 9
P+LPQ+ + + +HGC+S SW
Sbjct: 983 PALPQS--LKLLNVHGCVSLESVSW 1005
>At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1)
identical to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958]; updated per Conklin
PL et al, PNAS 1999, 96(7):4198-203
Length = 361
Score = 27.1 bits (57), Expect = 8.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 53 RVQIHGCISATLTSWHS 3
R++ H CIS+++ WHS
Sbjct: 297 RIKKHACISSSIIGWHS 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,551,423
Number of Sequences: 28952
Number of extensions: 232817
Number of successful extensions: 618
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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