Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L07
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 245   1e-65
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            87   1e-17
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            48   4e-06
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.008
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_45435| Best HMM Match : Transposase_8 (HMM E-Value=4.6e-27)         30   1.2  
SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24)       29   1.6  
SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)                28   5.0  
SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)                   27   8.7  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          27   8.7  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  245 bits (600), Expect = 1e-65
 Identities = 116/152 (76%), Positives = 130/152 (85%)
 Frame = +1

Query: 43  MSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERT 222
           MS  YDRAITVFSPDGHL QVEYAQEAV+KGSTA             E+K+VAKLQE RT
Sbjct: 1   MSGSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRT 60

Query: 223 VRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKY 402
           VRKIC LDDHV+MAFAGLTADARIL+N+A++ECQSHKLTVEDPVTLEYITR+IA LKQ+Y
Sbjct: 61  VRKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRY 120

Query: 403 TQSNGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
           TQSNGRRPFGIS LI GFD+DG+P L+QT+PS
Sbjct: 121 TQSNGRRPFGISTLIVGFDFDGTPRLYQTDPS 152


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 44/127 (34%), Positives = 68/127 (53%)
 Frame = +1

Query: 52  RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 231
           RYD + + FSPDG + QVEYA +AV    TA             EK  ++KL E    ++
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195

Query: 232 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 411
           I  +D H+ MA AGL AD+R ++  A+ E  +++     P+ L+Y+   ++G    +T  
Sbjct: 196 IFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLY 255

Query: 412 NGRRPFG 432
           +  RPFG
Sbjct: 256 SAMRPFG 262


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 22/73 (30%), Positives = 40/73 (54%)
 Frame = +1

Query: 280 ADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFD 459
           AD+R  + RA+ E  + K      + ++ + + IA + Q YTQ+   RP G   ++ G D
Sbjct: 63  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGID 122

Query: 460 YDGSPHLFQTEPS 498
            +  P L++T+P+
Sbjct: 123 EEKGPQLYKTDPA 135



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 46 SARYDRAITVFSPDGHL 96
          SA +DR IT+FSP+G L
Sbjct: 6  SAGFDRHITIFSPEGRL 22


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +1

Query: 415 GRRPFGISCLIGGFDYDGSPHLFQTEPS 498
           G RPFG+S L+ G+D D  P+LFQ +PS
Sbjct: 2   GVRPFGVSLLVAGWD-DDRPYLFQCDPS 28


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 46  SARYDRAITVFSPDGHLLQVEYAQEAVRK 132
           SA +DR IT+FSP+G L QV  ++  V++
Sbjct: 6   SAGFDRHITIFSPEGRLYQVADSRSQVQR 34



 Score = 32.3 bits (70), Expect = 0.23
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 280 ADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFG 432
           AD+R  + RA+ E  + K      + ++ + + +A + Q YTQ+   RP G
Sbjct: 26  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76


>SB_45435| Best HMM Match : Transposase_8 (HMM E-Value=4.6e-27)
          Length = 205

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 458 SNPPIKQDIPKGRRPLLWVYFCFSP-AIYLVIYSNVTGSSTVNL*DWHSI*ALLI 297
           SN P+  D+ +  +P LW +       +YL +      + T+N  DW  +  L+I
Sbjct: 27  SNSPVMADVQEEGKPQLWNHKQNDALGLYLDLLIQAINTGTINAEDWQKVFRLVI 81


>SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24)
          Length = 201

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 144 CCRTFSYSFLCIFYLQQMPVWRKNCYSSIVASRHFIILT 28
           CC+TF Y +   F LQ +      CY        F+ LT
Sbjct: 2   CCKTFRYDYYDSFVLQTVFYSGTMCYHGFPVLNRFVTLT 40


>SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)
          Length = 562

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +1

Query: 244 DDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGR 420
           DDHV++  AG+T D  +      +E +   + + DP T++ I +  AG+      +NG+
Sbjct: 441 DDHVLVIAAGVTLDEAMKAAN-HLELEGIHVRILDPFTVKPIDK--AGIVANAKAANGK 496


>SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)
          Length = 775

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -1

Query: 257 TTWSSRRQIFLTVLSSCNFATDFFSXXXXXXXXXXXXTAVEPFLTASCAYSTCNKCPSGE 78
           T  +S RQ +  +LSS  FA+D                   P    SC +  CNK   GE
Sbjct: 5   TASTSLRQKYSFLLSS--FASDEKESLAKKIDILGGTYTETPHFITSCTHIVCNKPNRGE 62

Query: 77  K 75
           K
Sbjct: 63  K 63


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 254  TWSSRRQIFLTVLSSCNFATDFFSXXXXXXXXXXXXTAVEPFLTAS 117
            T SS  ++FLT  SS    +DF +            +++  FLT+S
Sbjct: 981  TSSSSLRVFLTSSSSRGLLSDFLTSSSSLSDFLTSSSSLSDFLTSS 1026


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,313
Number of Sequences: 59808
Number of extensions: 208313
Number of successful extensions: 496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)