Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L07
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 207 3e-54
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 206 5e-54
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 120 7e-28
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 120 7e-28
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 119 1e-27
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 105 2e-23
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 105 2e-23
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 102 1e-22
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 101 2e-22
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 91 4e-19
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 91 5e-19
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 85 3e-17
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 30 0.76
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 30 0.76
At2g30500.1 68415.m03715 kinase interacting family protein simil... 29 1.3
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 25 2.1
At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH... 28 3.1
At1g10030.1 68414.m01131 integral membrane family protein contai... 28 3.1
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel... 27 5.4
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 27 7.1
At5g20380.1 68418.m02424 transporter-related low similarity to v... 27 9.4
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 207 bits (506), Expect = 3e-54
Identities = 101/151 (66%), Positives = 117/151 (77%), Gaps = 1/151 (0%)
Frame = +1
Query: 49 ARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVR 228
ARYDRAITVFSPDGHL QVEYA EAVRKG+ A EKKS KLQ+ R+ R
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSAR 61
Query: 229 KICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQ 408
KI LD+H+ +A AGL ADAR+LIN+A+IECQSH+LT+EDPVT+EYITRYIAGL+QKYTQ
Sbjct: 62 KIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQ 121
Query: 409 SNGRRPFGISCLIGGFD-YDGSPHLFQTEPS 498
S G RPFG+S LI GFD Y P L+QT+PS
Sbjct: 122 SGGVRPFGLSTLIVGFDPYSRLPSLYQTDPS 152
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 206 bits (504), Expect = 5e-54
Identities = 101/151 (66%), Positives = 117/151 (77%), Gaps = 1/151 (0%)
Frame = +1
Query: 49 ARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVR 228
ARYDRAITVFSPDGHL QVEYA EAVRKG+ A EKKS KLQ+ R+ R
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSAR 61
Query: 229 KICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQ 408
KI LD+H+ +A AGL ADAR+LIN+A+IECQSH+LT+EDPVT+EYITRYIAGL+QKYTQ
Sbjct: 62 KIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQ 121
Query: 409 SNGRRPFGISCLIGGFD-YDGSPHLFQTEPS 498
S G RPFG+S LI GFD Y P L+QT+PS
Sbjct: 122 SGGVRPFGLSTLIVGFDPYTRIPALYQTDPS 152
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 120 bits (288), Expect = 7e-28
Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Frame = +1
Query: 55 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 234
YDR + FSP+G L QVEYA EA++ GSTA EK+ + L E +V KI
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKI 67
Query: 235 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKY---T 405
+DDH+ A +GL ADAR L+ A++E Q+H+ + +P+T+E T+ + L ++
Sbjct: 68 MEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGE 127
Query: 406 QSNGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
+ + RPFG+S LI G D +G P L+ T+PS
Sbjct: 128 EESMSRPFGVSLLIAGHDENG-PSLYYTDPS 157
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 120 bits (288), Expect = 7e-28
Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Frame = +1
Query: 55 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 234
YDR + FSP+G L QVEYA EA++ GSTA EK+ + L E +V KI
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKI 67
Query: 235 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKY---T 405
+DDH+ A +GL ADAR L+ A++E Q+H+ + +P+T+E T+ + L ++
Sbjct: 68 MEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGE 127
Query: 406 QSNGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
+ + RPFG+S LI G D +G P L+ T+PS
Sbjct: 128 EESMSRPFGVSLLIAGHDENG-PSLYYTDPS 157
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 119 bits (287), Expect = 1e-27
Identities = 60/153 (39%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Frame = +1
Query: 43 MSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKL-QEER 219
MS RYD T+FSP+G L QVEYA EA+ +A EKK +KL Q
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTST 60
Query: 220 TVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQK 399
+ K+ +DDHV A AG+ +DA ILIN A+++ Q + ++P+ +E + + + KQ
Sbjct: 61 SAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQG 120
Query: 400 YTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
YTQ G RPFG+S L G+D L+ ++PS
Sbjct: 121 YTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPS 153
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 105 bits (251), Expect = 2e-23
Identities = 56/149 (37%), Positives = 83/149 (55%)
Frame = +1
Query: 52 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 231
+YD +T +SP G L QVEYA EAV++GS A K+ ++L + RK
Sbjct: 5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQ--RK 62
Query: 232 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 411
I +DDH+ +A AGLTAD R+L + E +H T E P+ + + ++A Q TQ
Sbjct: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQR 122
Query: 412 NGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
+ +RP+G+ L+GG D G+ HL+ PS
Sbjct: 123 SWKRPYGVGLLVGGLDESGA-HLYYNCPS 150
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 105 bits (251), Expect = 2e-23
Identities = 56/149 (37%), Positives = 83/149 (55%)
Frame = +1
Query: 52 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 231
+YD +T +SP G L QVEYA EAV++GS A K+ ++L + RK
Sbjct: 5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQ--RK 62
Query: 232 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 411
I +DDH+ +A AGLTAD R+L + E +H T E P+ + + ++A Q TQ
Sbjct: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQR 122
Query: 412 NGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
+ +RP+G+ L+GG D G+ HL+ PS
Sbjct: 123 SWKRPYGVGLLVGGLDESGA-HLYYNCPS 150
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 102 bits (245), Expect = 1e-22
Identities = 49/150 (32%), Positives = 88/150 (58%)
Frame = +1
Query: 49 ARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVR 228
++Y ++T FSP G L+Q+E+A AV G T+ EKK + L +E +V+
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQ 63
Query: 229 KICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQ 408
KI L ++ + ++G+ D R+L+ +++ + + + ++P+ + + R A + Q++TQ
Sbjct: 64 KIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQ 123
Query: 409 SNGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
S G RPFG+S L+ G+D D P L+Q +PS
Sbjct: 124 SGGVRPFGVSLLVAGYD-DKGPQLYQVDPS 152
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 101 bits (243), Expect = 2e-22
Identities = 49/150 (32%), Positives = 87/150 (58%)
Frame = +1
Query: 49 ARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVR 228
++Y ++T FSP G L+Q+E+A AV G T+ EKK + L +E +V+
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQ 63
Query: 229 KICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQ 408
KI L ++ ++G+ D R+L+ +++ + + + ++P+ + + R A + Q++TQ
Sbjct: 64 KIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQ 123
Query: 409 SNGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
S G RPFG+S L+ G+D D P L+Q +PS
Sbjct: 124 SGGVRPFGVSLLVAGYD-DKGPQLYQVDPS 152
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 91.1 bits (216), Expect = 4e-19
Identities = 51/148 (34%), Positives = 76/148 (51%)
Frame = +1
Query: 55 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 234
YD ++T FSPDG + Q+EYA +AV T EK +K+ + R+I
Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
Query: 235 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 414
+ H MA AGL AD R ++ RA+ E +S++ D V ++ ++ +A T
Sbjct: 68 HSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYW 127
Query: 415 GRRPFGISCLIGGFDYDGSPHLFQTEPS 498
RPFG ++GG+D DG P L+ EPS
Sbjct: 128 WLRPFGCGVILGGYDRDG-PQLYMIEPS 154
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 90.6 bits (215), Expect = 5e-19
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Frame = +1
Query: 49 ARYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAXXXXXXXXXXXXXEKKSVAKLQEERTV 225
A YDR IT+FSP+G L QVEYA +AV+ G T+ +KK KL ++ +V
Sbjct: 7 AGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSV 66
Query: 226 RKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYT 405
+ + ++ + G+TADAR L+ +A+ + + T + ++ + ++IA Q YT
Sbjct: 67 THLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYT 126
Query: 406 QSNGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
Q RP G+ ++ G D + P L++ +P+
Sbjct: 127 QHAYMRPLGVVAMVMGVDEENGPLLYKCDPA 157
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 85.0 bits (201), Expect = 3e-17
Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Frame = +1
Query: 49 ARYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAXXXXXXXXXXXXXEKKSVAKLQEERTV 225
A YDR IT+FSP+G L QVEYA +AV+ G T+ +KK KL ++ +V
Sbjct: 7 AGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSV 66
Query: 226 RKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYT 405
+ + ++ + G+TAD+R L+ +A+ E + + + + ++IA Q YT
Sbjct: 67 SHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYT 126
Query: 406 QSNGRRPFGISCLIGGFDYDGSPHLFQTEPS 498
Q RP G+ ++ G D + P L++ +P+
Sbjct: 127 QHAYMRPLGVVAMVLGIDEERGPLLYKCDPA 157
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 30.3 bits (65), Expect = 0.76
Identities = 19/92 (20%), Positives = 44/92 (47%)
Frame = +1
Query: 217 RTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQ 396
++V+KI ++ +++ AG AD + I+C+ H+L + +++ ++ +A +
Sbjct: 86 QSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLY 145
Query: 397 KYTQSNGRRPFGISCLIGGFDYDGSPHLFQTE 492
Y + +I G+D G P L+ +
Sbjct: 146 SYRGMG----LSVGTMIAGWDETG-PGLYYVD 172
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 30.3 bits (65), Expect = 0.76
Identities = 19/92 (20%), Positives = 44/92 (47%)
Frame = +1
Query: 217 RTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQ 396
++V+KI ++ +++ AG AD + I+C+ H+L + +++ ++ +A +
Sbjct: 86 QSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLY 145
Query: 397 KYTQSNGRRPFGISCLIGGFDYDGSPHLFQTE 492
Y + +I G+D G P L+ +
Sbjct: 146 SYRGMG----LSVGTMIAGWDETG-PGLYYVD 172
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 184 EKKSVAKLQEERTVRKICLLD-DHVVMAFAGLTADA--RILINRAQIECQSHKLTVE 345
EKK V KLQE + K L D D+ + A +DA +I +AQI+ + K+ E
Sbjct: 324 EKKEVLKLQERLAMVKTSLQDRDNEIRALKTAVSDAEQKIFPEKAQIKGEMSKMLEE 380
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 25.0 bits (52), Expect(2) = 2.1
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +1
Query: 187 KKSVAKLQEERTVRKICLLDDHVVMAFAGLT-----ADARILINRAQIEC-QSHKLTVED 348
++S+ K+ + +++ L DD + + A +T AD L+N A + + K+TV+
Sbjct: 505 RESILKVHVSK--KELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDK 562
Query: 349 PVTLEYITRYIAGLKQKYTQSNG 417
+ + R IAG+++K + G
Sbjct: 563 IDFIHAVERSIAGIEKKTARLKG 585
Score = 22.2 bits (45), Expect(2) = 2.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 52 RYDRAITVFSPD 87
R+DR +TV SPD
Sbjct: 490 RFDRVVTVESPD 501
>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
(CHX28) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 732
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 295 LINRAQIECQSHKLTVEDPVTLEYITRYIAG 387
++NRA + Q ++ ++D E+ RYIAG
Sbjct: 605 ILNRASVVDQEEEMKLDDECFAEFYERYIAG 635
>At1g10030.1 68414.m01131 integral membrane family protein contains
Pfam PF03694: Erg28 like protein
Length = 129
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 135 TFSYSFLCIFYLQQMPVWRKNCYSSIVASRHFIILTNYYF 16
T + FLC F L+ P++ S I A HF LT Y F
Sbjct: 54 TCTLCFLCAFNLENKPLYLATFLSFIYALGHF--LTEYLF 91
>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
putative (CNGC15) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 678
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 379 IAGLKQKYTQSNGRRPFGISCLIGGFDYDG 468
I G YT + GR F SCLIG D+ G
Sbjct: 512 IRGHLDSYTTNGGRTGFFNSCLIGPGDFCG 541
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 184 EKKSVAKL-QEERTVRKICLLDDHVVMAFAG 273
EKK +KL Q ++ K+ +DDHV A AG
Sbjct: 330 EKKVTSKLLQTSSSMEKMYKIDDHVACAVAG 360
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 443 KQDIPKGRRPLLWVYFCFSPAIYLVIYSNVTGS 345
K+++ + + W F SPA++ +IY++ GS
Sbjct: 298 KEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGS 330
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,862,090
Number of Sequences: 28952
Number of extensions: 148146
Number of successful extensions: 400
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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