Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L06
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    42   2e-05
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.69 
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   1.6  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   3.7  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    24   6.4  

>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 25/53 (47%), Positives = 33/53 (62%)
 Frame = +3

Query: 204 ITNNQRIIAAPESLKYALEKSAQSICI*ESHLSRTKWATKFKVQPLKPVAEEL 362
           ITNN RI+ A  ++KYALE+  +++ +  SHL R   A   K   LKPVA EL
Sbjct: 34  ITNNARIVGALPTIKYALEQQPKAVIL-MSHLGRPNGARVAKYS-LKPVAAEL 84


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 165 SITTSLVGLNVEDASMREFSHEPFLQRIVKRLNVYYLLIIY 43
           S+  SL  +N++DA+  E  H P     VKRL   Y L++Y
Sbjct: 134 SVQKSLANVNMDDANGPERLHYP----SVKRLREAYSLLVY 170


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 113 SRIDASSTFSPTSEVVMLSRTSTIPLQRRS 202
           +R   + TF  T ++  LSRTST+ L   S
Sbjct: 431 TRPHTNETFVTTDDITQLSRTSTLSLSTAS 460


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   VLMFTSIPFSCILYI*LRDNKHLTFSLSSAEMA 101
           +L  +S PF CILY+   +N  L   + + EMA
Sbjct: 79  LLWLSSFPF-CILYVGFGENSVLYHEMYTMEMA 110


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 88  EDSEKVKCLLSLNYIYNMQENGMLVNIRT 2
           ED E+ +   + N  YN+QE   L NIRT
Sbjct: 347 EDDEEDESSDASNNEYNIQERNDLGNIRT 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,478,632
Number of Sequences: 5004
Number of extensions: 25389
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)