Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L06
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0404 - 20460555-20462135                                         27   3.4  
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    27   6.0  

>06_03_0404 - 20460555-20462135
          Length = 526

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 89  CRNGSWLNSRIDASSTFSPTSEVVMLSRTSTIPLQRRS 202
           CR  SWL S +  +   S T   V+L+RT+++ +  ++
Sbjct: 327 CREMSWLQSMVYINGGTSSTPVEVLLNRTTSLSVYTKN 364


>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 192 CRGIVEVLLSITTSLVGLNVEDASMRE 112
           CRG+++VL S  T  +G+N    ++++
Sbjct: 809 CRGVIKVLFSTETFAMGVNAPARTLKD 835


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,947,584
Number of Sequences: 37544
Number of extensions: 145445
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)