Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L06
         (367 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_86| Best HMM Match : PGK (HMM E-Value=0)                            47   5e-06
SB_49244| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)                 27   4.7  
SB_8459| Best HMM Match : DUF408 (HMM E-Value=0.62)                    27   4.7  

>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 27/54 (50%), Positives = 35/54 (64%)
 Frame = +3

Query: 204 ITNNQRIIAAPESLKYALEKSAQSICI*ESHLSRTKWATKFKVQPLKPVAEELK 365
           ITNNQRI+AA  S+K+ LEK A+S+ +  SHL R     + K   + PVA ELK
Sbjct: 33  ITNNQRIVAALPSIKHCLEKGAKSVVL-MSHLGRPDGRVQEKYS-MAPVANELK 84


>SB_49244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 88  EDSEKVKCLLSLNYIYNMQENGMLVNI 8
           E S KV CL SLN + NM+   +LVN+
Sbjct: 413 EGSCKVVCLSSLNILENMKLGSILVNL 439


>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
          Length = 1011

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 271 CALFSKAYFSDSGAAIMR*LFVITP 197
           C   S AYFSDS   I + LF  TP
Sbjct: 251 CRSSSSAYFSDSAPEISQDLFSFTP 275


>SB_8459| Best HMM Match : DUF408 (HMM E-Value=0.62)
          Length = 581

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 271 CALFSKAYFSDSGAAIMR*LFVITP 197
           C   S AYFSDS   I + LF  TP
Sbjct: 320 CRSSSSAYFSDSAPEISQDLFSFTP 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,669,877
Number of Sequences: 59808
Number of extensions: 174070
Number of successful extensions: 332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)