Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L04
         (244 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920...    27   1.6  
09_04_0267 - 16246512-16246689,16247047-16247183,16247376-162474...    26   3.7  
10_01_0229 + 2425090-2425819,2426602-2426720                           25   6.4  
06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706     25   6.4  
01_06_1525 + 37988037-37988237,37988315-37988410,37988508-379886...    25   6.4  
01_01_0387 + 2999222-2999495,2999834-2999934                           25   6.4  
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934...    25   8.5  

>01_01_1157 -
           9203448-9203560,9204725-9204768,9205345-9205433,
           9205565-9205609,9205805-9205912,9206003-9206088,
           9206492-9206579,9206725-9206910,9207181-9207256,
           9207332-9207381,9207715-9207777,9207882-9207962,
           9208028-9208130,9208246-9208348,9208489-9208549,
           9209059-9209154,9209185-9209225,9209848-9209922,
           9210412-9210562
          Length = 552

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 139 GGDRGTPVLRVWGYNP 186
           GG  G P+ R WGY+P
Sbjct: 3   GGGAGEPLRRAWGYHP 18


>09_04_0267 -
           16246512-16246689,16247047-16247183,16247376-16247471,
           16247658-16248579,16249396-16249455,16249860-16250125
          Length = 552

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 116 LFVLCLAGGEIGGHRYYGYGVTTQDGAF 199
           L ++ L GGE   H Y G G   +  AF
Sbjct: 24  LLLMLLGGGEASVHEYRGLGFLNKGNAF 51


>10_01_0229 + 2425090-2425819,2426602-2426720
          Length = 282

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 240 VWASQPNCDGVAGW 199
           VW  + N DG+AGW
Sbjct: 156 VWKGKTNRDGIAGW 169


>06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706
          Length = 320

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 188 LGL*PHTRSTGVPRSPPQQDREQI 117
           LG  P  R    P +PP QDR +I
Sbjct: 109 LGSRPPKRPASAPSAPPAQDRHRI 132


>01_06_1525 +
           37988037-37988237,37988315-37988410,37988508-37988620,
           37988739-37988805,37988891-37988983,37989095-37989238,
           37989681-37989769,37989912-37990017,37990224-37990311,
           37990395-37990513,37990786-37990950,37991222-37991406,
           37991568-37991668,37991960-37992069,37992287-37992394,
           37992596-37992706,37992791-37993002,37993087-37993423,
           37993593-37993619,37993767-37993877
          Length = 860

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 151 GTPVLRVWGYNPR-WRFPSGNTITI 222
           G P  R W + PR W  PSGNT+ I
Sbjct: 697 GQPTQR-WYHVPRSWFHPSGNTLVI 720


>01_01_0387 + 2999222-2999495,2999834-2999934
          Length = 124

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = +2

Query: 137 GGEIGGHRYY----GYGVTTQDGAFHPATPSQLG 226
           GG  GGH Y     G+G     GA H A P Q G
Sbjct: 31  GGHGGGHGYEQGYGGHGYPPHAGAAHGAYPPQHG 64


>03_04_0157 +
           17791540-17791681,17792809-17792908,17793386-17793477,
           17793562-17793620,17794135-17795637,17796478-17796720,
           17796831-17797145,17797571-17797573,17798399-17798638,
           17798975-17799259,17799335-17799556,17800105-17800266,
           17800411-17800545,17802452-17802688,17802787-17802960,
           17803692-17803934
          Length = 1384

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 212 VLPDGKRHLGL*PHTRSTGVP 150
           VLPDG  HL L  + R  G+P
Sbjct: 32  VLPDGLAHLTLLQYLRDIGLP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,614,348
Number of Sequences: 37544
Number of extensions: 76038
Number of successful extensions: 265
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)