Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L04
         (244 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)                 26   5.4  
SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23)          26   5.4  
SB_58174| Best HMM Match : 3_5_exonuc (HMM E-Value=1e-12)              25   7.2  

>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
          Length = 1213

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 155 HRYYGYGVTTQDGAFHPATPSQL 223
           HR  G+     D AFHPA P  L
Sbjct: 249 HRLTGHTEVVSDVAFHPARPEVL 271


>SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23)
          Length = 571

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 148 RGTPVLRVWGYNPRWRFPSGNT 213
           +GT     +GYNP ++ PSG+T
Sbjct: 408 KGTYRKIAYGYNPVYKIPSGST 429


>SB_58174| Best HMM Match : 3_5_exonuc (HMM E-Value=1e-12)
          Length = 322

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 153 DTGTTGMGLQPKMALSIRQHHHN 221
           D   TGM + P  A +I +H HN
Sbjct: 129 DLNKTGMNVSPMQAPAIIEHKHN 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,879,634
Number of Sequences: 59808
Number of extensions: 66170
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 16,821,457
effective HSP length: 58
effective length of database: 13,352,593
effective search space used: 293757046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)