Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L04
         (244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83240-3|CAB05813.2|  483|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z81489-8|CAD60414.1|  120|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AL023835-4|CAD56254.1|  564|Caenorhabditis elegans Hypothetical ...    26   4.1  
AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical ...    26   4.1  
AL023835-1|CAA19486.1|  164|Caenorhabditis elegans Hypothetical ...    26   4.1  
AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    25   7.1  

>Z83240-3|CAB05813.2|  483|Caenorhabditis elegans Hypothetical
           protein T23H4.1 protein.
          Length = 483

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 143 EIGGHRYYGYGV 178
           E+  HRYYGYG+
Sbjct: 247 ELDSHRYYGYGI 258


>Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical
           protein ZK809.2 protein.
          Length = 248

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 166 RVWGYNPRWRFPSGNTITIRLRSPYF 243
           +VW   P +    GNT+T+ +  P+F
Sbjct: 166 KVWPTQPPYYPKFGNTVTVHIGEPFF 191


>Z81489-8|CAD60414.1|  120|Caenorhabditis elegans Hypothetical
           protein C55A1.11 protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 243 EVWASQPNCDGVAGWKAPSWVVTPYP*YRCPPI-SPPARQ 127
           E+   Q   DGVA    P    +    +R PPI SPPA+Q
Sbjct: 16  EIIHKQNVMDGVANGSDPEPSCSSLAKWRLPPIPSPPAKQ 55


>AL023835-4|CAD56254.1|  564|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2d protein.
          Length = 564

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 237 WASQPNCDGVAGWKAPSWVVTPYP*YRCPPISPP 136
           W    N  G  G    S+V TPY   R PP+ PP
Sbjct: 38  WIEGRNVRGSVGLFPESYV-TPYQASRPPPVLPP 70


>AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2c protein.
          Length = 566

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 237 WASQPNCDGVAGWKAPSWVVTPYP*YRCPPISPP 136
           W    N  G  G    S+V TPY   R PP+ PP
Sbjct: 38  WIEGRNVRGSVGLFPESYV-TPYQASRPPPVLPP 70


>AL023835-1|CAA19486.1|  164|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2a protein.
          Length = 164

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 237 WASQPNCDGVAGWKAPSWVVTPYP*YRCPPISPP 136
           W    N  G  G    S+V TPY   R PP+ PP
Sbjct: 38  WIEGRNVRGSVGLFPESYV-TPYQASRPPPVLPP 70


>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 225 PNCDGVAGWKAPSWVVTPYP*YRCPPISP 139
           P C G+   + P  +  P P + CPP +P
Sbjct: 24  PPCFGIGCNQPPIVIAGPPPCFDCPPPAP 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,457
Number of Sequences: 27780
Number of extensions: 51101
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)