Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L04
         (244 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48230.1 68416.m05262 expressed protein several hypothetical ...    26   4.0  
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    25   7.0  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    25   7.0  
At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containi...    25   9.3  

>At3g48230.1 68416.m05262 expressed protein several hypothetical
           proteins - Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 373

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 137 GGEIGGHRYYGYGVTTQDGAFH 202
           GGEI   R YG   TTQ G+ H
Sbjct: 286 GGEIVNSRSYGQHTTTQMGSGH 307


>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
           'Morpheus molecule') [Arabidopsis thaliana]
           gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 175 GYNPRWRFPSGNTITIRLRSPYF 243
           G NP W++PS      R R  YF
Sbjct: 820 GKNPMWKYPSDTPQRNRKRVQYF 842


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
           'Morpheus molecule') [Arabidopsis thaliana]
           gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 175 GYNPRWRFPSGNTITIRLRSPYF 243
           G NP W++PS      R R  YF
Sbjct: 820 GKNPMWKYPSDTPQRNRKRVQYF 842


>At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 591

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 128 CLAGGEIGGHRYYGYGVTTQDGA 196
           CL     G  RY G+GVT  +GA
Sbjct: 10  CLFIDSSGFQRYLGFGVTNLNGA 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,984
Number of Sequences: 28952
Number of extensions: 48884
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,070,560
effective HSP length: 59
effective length of database: 10,362,392
effective search space used: 217610232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)