BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_L04 (244 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g48230.1 68416.m05262 expressed protein several hypothetical ... 26 4.0 At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 25 7.0 At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 25 7.0 At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containi... 25 9.3 >At3g48230.1 68416.m05262 expressed protein several hypothetical proteins - Arabidopsis thaliana contains Pfam profile PF03080: Arabidopsis proteins of unknown function Length = 373 Score = 25.8 bits (54), Expect = 4.0 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +2 Query: 137 GGEIGGHRYYGYGVTTQDGAFH 202 GGEI R YG TTQ G+ H Sbjct: 286 GGEIVNSRSYGQHTTTQMGSGH 307 >At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a 'Morpheus molecule') [Arabidopsis thaliana] gi|8132770|gb|AAF73381.1| Length = 2001 Score = 25.0 bits (52), Expect = 7.0 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +1 Query: 175 GYNPRWRFPSGNTITIRLRSPYF 243 G NP W++PS R R YF Sbjct: 820 GKNPMWKYPSDTPQRNRKRVQYF 842 >At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a 'Morpheus molecule') [Arabidopsis thaliana] gi|8132770|gb|AAF73381.1| Length = 2001 Score = 25.0 bits (52), Expect = 7.0 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +1 Query: 175 GYNPRWRFPSGNTITIRLRSPYF 243 G NP W++PS R R YF Sbjct: 820 GKNPMWKYPSDTPQRNRKRVQYF 842 >At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 591 Score = 24.6 bits (51), Expect = 9.3 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 128 CLAGGEIGGHRYYGYGVTTQDGA 196 CL G RY G+GVT +GA Sbjct: 10 CLFIDSSGFQRYLGFGVTNLNGA 32 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,371,984 Number of Sequences: 28952 Number of extensions: 48884 Number of successful extensions: 149 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 149 length of database: 12,070,560 effective HSP length: 59 effective length of database: 10,362,392 effective search space used: 217610232 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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