BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_L03 (461 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.26 SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 1.1 SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 2.4 SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 3.2 SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 3.2 SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.8 SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 24 9.8 >SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 105 Score = 29.5 bits (63), Expect = 0.26 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -3 Query: 396 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 289 F+ S IS ++N R Y+ I YCF Y++ Sbjct: 4 FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39 >SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces pombe|chr 2|||Manual Length = 373 Score = 27.5 bits (58), Expect = 1.1 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%) Frame = +1 Query: 118 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 276 N N Q A + + KN S++ S + L IAS +H+ + I Sbjct: 59 NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118 Query: 277 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 399 + + ++ D+ +K+R + VDL+ K NEL Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160 >SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharomyces pombe|chr 1|||Manual Length = 315 Score = 26.2 bits (55), Expect = 2.4 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -3 Query: 447 HFRIKHISGHNSKLII*FI 391 HF + H+ GH SKL F+ Sbjct: 72 HFHVSHVPGHASKLYFAFL 90 >SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1|||Manual Length = 881 Score = 25.8 bits (54), Expect = 3.2 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = -1 Query: 458 FKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 330 F FC + +N SLD + +YTL+ L P + +T Sbjct: 296 FSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338 >SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 675 Score = 25.8 bits (54), Expect = 3.2 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 286 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 456 ND + +A +DL QK+ L N ++ ++ D+F+ R + + NL Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602 >SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 24.2 bits (50), Expect = 9.8 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%) Frame = -1 Query: 257 SCDSPVEAIAS-WANGIMT 204 SCDSPV+++AS A GI+T Sbjct: 51 SCDSPVKSLASHGAVGIVT 69 >SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizosaccharomyces pombe|chr 1|||Manual Length = 201 Score = 24.2 bits (50), Expect = 9.8 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +3 Query: 27 HRHHDSIIITTIRPRGLDIGQ*HRPTKSTQ 116 H+H +S +T+I + IG+ HR S Q Sbjct: 156 HKHRESRGLTSIGKKSRGIGKGHRYNNSPQ 185 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,665,307 Number of Sequences: 5004 Number of extensions: 29123 Number of successful extensions: 90 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 90 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 174340060 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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