Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L03
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.26 
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   1.1  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   2.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   3.2  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   3.2  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.8  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    24   9.8  

>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 396 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 289
           F+  S    IS  ++N   R Y+ I    YCF Y++
Sbjct: 4   FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
 Frame = +1

Query: 118 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 276
           N N Q  A    + + KN   S++    S     + L IAS   +H+ +   I       
Sbjct: 59  NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118

Query: 277 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 399
            +    +   ++  D+ +K+R +  VDL+   K      NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 447 HFRIKHISGHNSKLII*FI 391
           HF + H+ GH SKL   F+
Sbjct: 72  HFHVSHVPGHASKLYFAFL 90


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 458 FKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 330
           F FC + +N SLD        +    +YTL+  L   P + +T
Sbjct: 296 FSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 286 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 456
           ND + +A  +DL QK+         L N ++    ++  D+F+   R   +  + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = -1

Query: 257 SCDSPVEAIAS-WANGIMT 204
           SCDSPV+++AS  A GI+T
Sbjct: 51  SCDSPVKSLASHGAVGIVT 69


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 27  HRHHDSIIITTIRPRGLDIGQ*HRPTKSTQ 116
           H+H +S  +T+I  +   IG+ HR   S Q
Sbjct: 156 HKHRESRGLTSIGKKSRGIGKGHRYNNSPQ 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,307
Number of Sequences: 5004
Number of extensions: 29123
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)