Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L03
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310...    33   0.15 
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    27   9.7  

>03_02_0834 -
           11630288-11630500,11630531-11630623,11630844-11631050,
           11631301-11633089,11633817-11634145
          Length = 876

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +1

Query: 247 ESHDELLKAIDFPNDNVTKAVFTDLNQKVRSI--KGVDLKLANKVYIANGNELNDQFAVV 420
           + HD LLK+    NDN+TK    + NQ +  +  KG D K  +KV        N+Q   +
Sbjct: 467 KEHDTLLKSSVELNDNLTKTA-EERNQILECLKEKGGDNKALHKVIARLQRISNEQEKTI 525

Query: 421 S--RDVFNSEVQN 453
           +  R  FN+E++N
Sbjct: 526 TGLRQGFNAELEN 538


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 14   ETRKSPTP*QHYNNHYSPSRX*HWPVTSTHKEYSRMEMINSPH 142
            ++RK PTP   Y +   PS+    P   + ++ S+ E+   PH
Sbjct: 2609 DSRKPPTPDTQYASQIIPSQEKVAPDVPSQEKVSQAELSLKPH 2651


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,217,033
Number of Sequences: 37544
Number of extensions: 169949
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)