Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L03
(461 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi... 32 0.22
At5g15630.1 68418.m01829 phytochelatin synthetase family protein... 29 1.5
At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containi... 28 2.7
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 3.5
At2g34250.1 68415.m04190 protein transport protein sec61, putati... 28 3.5
At1g29310.1 68414.m03583 protein transport protein sec61, putati... 28 3.5
At3g27670.1 68416.m03455 expressed protein 27 4.7
At2g43340.1 68415.m05389 expressed protein 27 6.2
At1g33050.2 68414.m04070 expressed protein 27 6.2
At1g33050.1 68414.m04069 expressed protein 27 6.2
At3g01220.1 68416.m00028 homeobox-leucine zipper protein, putati... 27 8.2
At1g80200.1 68414.m09386 expressed protein ; expression supporte... 27 8.2
>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 939
Score = 31.9 bits (69), Expect = 0.22
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 130 QFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGE-SHDELLKAIDFPNDNVTKA 306
Q +F E++ + K ++ SV ++ L G+ +HD L + PNDN+T A
Sbjct: 673 QLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNFSTIPPNDNLTAA 732
Query: 307 VFTDLNQKVRSIK 345
+ D+ K SI+
Sbjct: 733 II-DMYAKCGSIE 744
>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
COBRA cell expansion protein COBL4 similar to
phytochelatin synthetase [Hordeum vulgare subsp.
vulgare] GI:29570314; identified in Roudier, et al,
Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 431
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 5 GIRETRKSPTP*QHYNNHYSPSRX*HWPVTSTHKEYSRMEM 127
G+ +K TP +H P R HW V + +K+Y R+++
Sbjct: 257 GLNTPKKDNTPLLQCTHHMCPVRV-HWHVKTNYKDYWRVKI 296
>At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 668
Score = 28.3 bits (60), Expect = 2.7
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Frame = +1
Query: 121 GNDQFTARMFNEVVK-KNPDKSVILSAF-SVMIPLAQLAIASTGESHDELLKAIDFPNDN 294
G ++F R N VV+ ++ V + + V Q + E+ A ++N
Sbjct: 298 GKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNN 357
Query: 295 VTKAVFTDLNQKVRSIKGVDLKL---ANKVYIANGNELND 405
T F L +K+ + K +D+ L A KVY NGN L D
Sbjct: 358 PTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTD 397
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
putative contains Pfam domain PF01851:
Proteasome/cyclosome repeat
Length = 1103
Score = 27.9 bits (59), Expect = 3.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 298 TKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL--NDQFAVVSRDVFNSEVQNL 456
T V N+K+R K D+ L + Y GN L +DQF++ + + +VQ+L
Sbjct: 637 TAEVSKTFNEKIR--KYCDMTLLSCAYAGTGNVLKVSDQFSLTLQTIQTIQVQDL 689
>At2g34250.1 68415.m04190 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 444 FRIKHISGHNSKLII*FITVSNVYFISQFEINSFNRSYFL 325
+ IK N +I+ VSN+YFISQ F+ ++F+
Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321
>At1g29310.1 68414.m03583 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 444 FRIKHISGHNSKLII*FITVSNVYFISQFEINSFNRSYFL 325
+ IK N +I+ VSN+YFISQ F+ ++F+
Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321
>At3g27670.1 68416.m03455 expressed protein
Length = 1841
Score = 27.5 bits (58), Expect = 4.7
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -1
Query: 455 KFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPL-IDLTF*FKSVNTALVTLSLGK 279
K+ T N S+ A S SL L T L S S + + + V LVT+S
Sbjct: 335 KWKTESENLSVKDAAGSSVESLLLFPITALMSSPSKSIKVAASKVLSIVENFLVTVSNAP 394
Query: 278 SIALRSSSCDSPVEAIAS 225
I + +S DSP+ + S
Sbjct: 395 KIEVHTSKGDSPLSRVGS 412
>At2g43340.1 68415.m05389 expressed protein
Length = 189
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 266 RSSSCDSPVEAIASWANGIMTENADNI 186
+SS DSPV IASW +N D++
Sbjct: 144 KSSVLDSPVSPIASWKISSPGDNPDDV 170
>At1g33050.2 68414.m04070 expressed protein
Length = 607
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 361 LANKVYIANGNELNDQFAVVSRDVFNSEVQNLN 459
L+ + +A+G+E +D D+ NS VQNLN
Sbjct: 529 LSELLTLAHGSESSDSPNAEELDLINSTVQNLN 561
>At1g33050.1 68414.m04069 expressed protein
Length = 693
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 361 LANKVYIANGNELNDQFAVVSRDVFNSEVQNLN 459
L+ + +A+G+E +D D+ NS VQNLN
Sbjct: 529 LSELLTLAHGSESSDSPNAEELDLINSTVQNLN 561
>At3g01220.1 68416.m00028 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeobox-leucine zipper protein, HAT7 (GB:Q00466)
[Arabidopsis thaliana]
Length = 286
Score = 26.6 bits (56), Expect = 8.2
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = -1
Query: 320 KSVNTALVTLS---LGKSIALRSSSCDS----PVEAIASWANGIMTENADNI 186
KS N +L+ + L + +AL++ C+ EA ASW+N TEN+ +I
Sbjct: 159 KSDNASLLAYNKKLLAEVMALKNKECNEGNIVKREAEASWSNNGSTENSSDI 210
>At1g80200.1 68414.m09386 expressed protein ; expression supported
by MPSS
Length = 234
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 308 TALVTLSLGKSIALRSSSCDSPVEAIAS 225
T + L + + +A R+ SC++P+E I+S
Sbjct: 51 TDSILLGIEEIVACRNKSCETPLEVISS 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,510,277
Number of Sequences: 28952
Number of extensions: 146798
Number of successful extensions: 402
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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