BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_L03 (461 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi... 32 0.22 At5g15630.1 68418.m01829 phytochelatin synthetase family protein... 29 1.5 At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containi... 28 2.7 At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 3.5 At2g34250.1 68415.m04190 protein transport protein sec61, putati... 28 3.5 At1g29310.1 68414.m03583 protein transport protein sec61, putati... 28 3.5 At3g27670.1 68416.m03455 expressed protein 27 4.7 At2g43340.1 68415.m05389 expressed protein 27 6.2 At1g33050.2 68414.m04070 expressed protein 27 6.2 At1g33050.1 68414.m04069 expressed protein 27 6.2 At3g01220.1 68416.m00028 homeobox-leucine zipper protein, putati... 27 8.2 At1g80200.1 68414.m09386 expressed protein ; expression supporte... 27 8.2 >At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 939 Score = 31.9 bits (69), Expect = 0.22 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +1 Query: 130 QFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGE-SHDELLKAIDFPNDNVTKA 306 Q +F E++ + K ++ SV ++ L G+ +HD L + PNDN+T A Sbjct: 673 QLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNFSTIPPNDNLTAA 732 Query: 307 VFTDLNQKVRSIK 345 + D+ K SI+ Sbjct: 733 II-DMYAKCGSIE 744 >At5g15630.1 68418.m01829 phytochelatin synthetase family protein / COBRA cell expansion protein COBL4 similar to phytochelatin synthetase [Hordeum vulgare subsp. vulgare] GI:29570314; identified in Roudier, et al, Plant Phys. (2002) 130:538-548 (PMID:12376623); contains Pfam profile PF04833: Phytochelatin synthetase-like conserved region Length = 431 Score = 29.1 bits (62), Expect = 1.5 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +2 Query: 5 GIRETRKSPTP*QHYNNHYSPSRX*HWPVTSTHKEYSRMEM 127 G+ +K TP +H P R HW V + +K+Y R+++ Sbjct: 257 GLNTPKKDNTPLLQCTHHMCPVRV-HWHVKTNYKDYWRVKI 296 >At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 668 Score = 28.3 bits (60), Expect = 2.7 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Frame = +1 Query: 121 GNDQFTARMFNEVVK-KNPDKSVILSAF-SVMIPLAQLAIASTGESHDELLKAIDFPNDN 294 G ++F R N VV+ ++ V + + V Q + E+ A ++N Sbjct: 298 GKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNN 357 Query: 295 VTKAVFTDLNQKVRSIKGVDLKL---ANKVYIANGNELND 405 T F L +K+ + K +D+ L A KVY NGN L D Sbjct: 358 PTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTD 397 >At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative contains Pfam domain PF01851: Proteasome/cyclosome repeat Length = 1103 Score = 27.9 bits (59), Expect = 3.5 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = +1 Query: 298 TKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL--NDQFAVVSRDVFNSEVQNL 456 T V N+K+R K D+ L + Y GN L +DQF++ + + +VQ+L Sbjct: 637 TAEVSKTFNEKIR--KYCDMTLLSCAYAGTGNVLKVSDQFSLTLQTIQTIQVQDL 689 >At2g34250.1 68415.m04190 protein transport protein sec61, putative similar to PfSec61 [Plasmodium falciparum] GI:3057044; contains Pfam profile PF00344: eubacterial secY protein Length = 475 Score = 27.9 bits (59), Expect = 3.5 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -3 Query: 444 FRIKHISGHNSKLII*FITVSNVYFISQFEINSFNRSYFL 325 + IK N +I+ VSN+YFISQ F+ ++F+ Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321 >At1g29310.1 68414.m03583 protein transport protein sec61, putative similar to PfSec61 [Plasmodium falciparum] GI:3057044; contains Pfam profile PF00344: eubacterial secY protein Length = 475 Score = 27.9 bits (59), Expect = 3.5 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -3 Query: 444 FRIKHISGHNSKLII*FITVSNVYFISQFEINSFNRSYFL 325 + IK N +I+ VSN+YFISQ F+ ++F+ Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321 >At3g27670.1 68416.m03455 expressed protein Length = 1841 Score = 27.5 bits (58), Expect = 4.7 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = -1 Query: 455 KFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPL-IDLTF*FKSVNTALVTLSLGK 279 K+ T N S+ A S SL L T L S S + + + V LVT+S Sbjct: 335 KWKTESENLSVKDAAGSSVESLLLFPITALMSSPSKSIKVAASKVLSIVENFLVTVSNAP 394 Query: 278 SIALRSSSCDSPVEAIAS 225 I + +S DSP+ + S Sbjct: 395 KIEVHTSKGDSPLSRVGS 412 >At2g43340.1 68415.m05389 expressed protein Length = 189 Score = 27.1 bits (57), Expect = 6.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 266 RSSSCDSPVEAIASWANGIMTENADNI 186 +SS DSPV IASW +N D++ Sbjct: 144 KSSVLDSPVSPIASWKISSPGDNPDDV 170 >At1g33050.2 68414.m04070 expressed protein Length = 607 Score = 27.1 bits (57), Expect = 6.2 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 361 LANKVYIANGNELNDQFAVVSRDVFNSEVQNLN 459 L+ + +A+G+E +D D+ NS VQNLN Sbjct: 529 LSELLTLAHGSESSDSPNAEELDLINSTVQNLN 561 >At1g33050.1 68414.m04069 expressed protein Length = 693 Score = 27.1 bits (57), Expect = 6.2 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 361 LANKVYIANGNELNDQFAVVSRDVFNSEVQNLN 459 L+ + +A+G+E +D D+ NS VQNLN Sbjct: 529 LSELLTLAHGSESSDSPNAEELDLINSTVQNLN 561 >At3g01220.1 68416.m00028 homeobox-leucine zipper protein, putative / HD-ZIP transcription factor, putative similar to homeobox-leucine zipper protein, HAT7 (GB:Q00466) [Arabidopsis thaliana] Length = 286 Score = 26.6 bits (56), Expect = 8.2 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%) Frame = -1 Query: 320 KSVNTALVTLS---LGKSIALRSSSCDS----PVEAIASWANGIMTENADNI 186 KS N +L+ + L + +AL++ C+ EA ASW+N TEN+ +I Sbjct: 159 KSDNASLLAYNKKLLAEVMALKNKECNEGNIVKREAEASWSNNGSTENSSDI 210 >At1g80200.1 68414.m09386 expressed protein ; expression supported by MPSS Length = 234 Score = 26.6 bits (56), Expect = 8.2 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = -1 Query: 308 TALVTLSLGKSIALRSSSCDSPVEAIAS 225 T + L + + +A R+ SC++P+E I+S Sbjct: 51 TDSILLGIEEIVACRNKSCETPLEVISS 78 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,510,277 Number of Sequences: 28952 Number of extensions: 146798 Number of successful extensions: 402 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 395 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 402 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 772134480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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