Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K22
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.1  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   5.1  
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    25   6.7  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   6.7  

>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -3

Query: 417 NGICCSFIISHFILFPKN---SFIFLLPAHFFIISKF 316
           N +CCSF     ILF  +    FI L P  F +  KF
Sbjct: 89  NSLCCSFTCYPSILFASSLPIQFIALPPTVFLLFFKF 125


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 459  QLLHSAHIHPYSKLYCIIDN 518
            +L+ +  +HP S LYC++D+
Sbjct: 1013 ELVVNNFLHPQSSLYCVLDS 1032


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 400 LHNQPLHSF-----SKEFFHLSP-SCSFFYHQQVSETFPERQHLL 284
           L + PL  F     +K F H +   CS+FY  Q   TF E  +LL
Sbjct: 260 LWSDPLEDFGSEKSNKHFIHNNVRGCSYFYSYQAVCTFLENNNLL 304


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 220 KYSQRSLKQTMQEPSSLPEHAPSRTTILE*QIL*KHFHKTEPMILWTHYD 71
           K   +SLK  + +PS LPE A    ++++     K +    P   W H++
Sbjct: 25  KAESQSLKSFLYDPSKLPEVADFVVSVIQADFKGK-YSTIPPHGRWQHFE 73


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 612 TIHEIKCGNLKDNYYNFSLGSSGEQ 538
           +I E+KC N+  N Y  S G + E+
Sbjct: 304 SIAEVKCNNIVTNLYPISSGLNNEK 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,478
Number of Sequences: 5004
Number of extensions: 52567
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)