Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K22
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)              131   4e-31
SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42)                32   0.43 
SB_54329| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.16)              29   4.0  
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)          28   7.0  
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)                 27   9.3  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score =  131 bits (317), Expect = 4e-31
 Identities = 60/112 (53%), Positives = 81/112 (72%)
 Frame = +1

Query: 28  KAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHALEVSSALAWFVLVT 207
           K  +KE+ELLLQ+FSR+VSTKSS LFY NA IVSAIP+WLFWR+H ++  S+   F ++T
Sbjct: 5   KKLSKEDELLLQNFSRSVSTKSSILFYANALIVSAIPLWLFWRIHQMDPYSSGILFAVMT 64

Query: 208 AASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDER 363
             STWL+A AY+N KFQLKH             ++++L  +KK++R+EKDER
Sbjct: 65  LVSTWLVAFAYKNVKFQLKHKIAQRRDAAITKEVNQELDPNKKLTRQEKDER 116


>SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42)
          Length = 240

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 606 HEIKCGNLKDNY-YNFSLGSSGEQCQESRSSCQ*YNIIYCRGECAQNVEAAQYD 448
           H+ +C     NY  + SLG  GE+C+ S+  CQ  N     G+C + +    Y+
Sbjct: 48  HDGECSVAGKNYDCSCSLGWKGEKCEASQGKCQ-KNPCMNGGKCVETLSGTGYE 100


>SB_54329| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.16)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 78  CVHKIIGSVLWKCFHSICYSNMVVLEGACSGSELGSCMVCFSDRCEYLVTC 230
           C HK   +V   C H  C     V  G  SG+    C + + + C+ +V C
Sbjct: 221 CTHKEELTVGKSCIHVACSVGSTVWLGTESGTLHVYCAITYRELCKGVVKC 271


>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 368 FGKRMKWLIMKLQHMPFFIIMP-CSL-PLSYWAASTF 472
           F KR+ W+ M   H+ F++ MP C +     W  +TF
Sbjct: 417 FSKRIVWIFMLPVHLAFYVTMPDCRVKKWEAWYPATF 453


>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
          Length = 486

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = -1

Query: 305 SRATASSLRTATRCFS*NLVLRYASASNQVLAAVTKTNHARAELTSRACTLQNNHIGIAD 126
           +  T  +LR A   ++ N+ +R    ++ +     +  HAR      ACT+Q+ H G   
Sbjct: 230 THGTTRTLRYAG--YNRNIAVRTVQHAHHITTPTVQ--HARYNTHITACTVQHEHCGTHG 285

Query: 125 TMKAFP*NRADDFVDT 78
           T + F   R +  + T
Sbjct: 286 TTRTFRHARYNTHITT 301


>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
          Length = 900

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 78  CVHKIIGSVLWKCFHSICYSNMVVLEGA-CSGSELGSCMVCFSDRC 212
           C +   G V WK     C +      GA C GS  G C VC S +C
Sbjct: 376 CSYTCGGGVQWKT--RTCTNPKPARGGADCVGSSRGHCRVCNSVQC 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,754,089
Number of Sequences: 59808
Number of extensions: 393126
Number of successful extensions: 1090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)