Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K22
(620 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence recepto... 213 6e-55
BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence recepto... 213 6e-55
AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated p... 213 6e-55
AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein. 213 6e-55
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 30 5.7
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
>BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 213 bits (519), Expect = 6e-55
Identities = 100/168 (59%), Positives = 128/168 (76%), Gaps = 2/168 (1%)
Frame = +1
Query: 10 MSGKGNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHALEVSSALA 189
M+ KG+ EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 190 WFVLVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSRKEKDER 363
+ ++T ST+L+A AY+N KF LKH ++RKL AD++KMSRKEKDER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 364 ILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNYIV 507
ILWKKNEVADYEATT++IFYNN LFL +VI+ SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 213 bits (519), Expect = 6e-55
Identities = 100/168 (59%), Positives = 128/168 (76%), Gaps = 2/168 (1%)
Frame = +1
Query: 10 MSGKGNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHALEVSSALA 189
M+ KG+ EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 190 WFVLVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSRKEKDER 363
+ ++T ST+L+A AY+N KF LKH ++RKL AD++KMSRKEKDER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 364 ILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNYIV 507
ILWKKNEVADYEATT++IFYNN LFL +VI+ SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated
protein gamma subunit protein.
Length = 185
Score = 213 bits (519), Expect = 6e-55
Identities = 100/168 (59%), Positives = 128/168 (76%), Gaps = 2/168 (1%)
Frame = +1
Query: 10 MSGKGNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHALEVSSALA 189
M+ KG+ EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 190 WFVLVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSRKEKDER 363
+ ++T ST+L+A AY+N KF LKH ++RKL AD++KMSRKEKDER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 364 ILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNYIV 507
ILWKKNEVADYEATT++IFYNN LFL +VI+ SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein.
Length = 185
Score = 213 bits (519), Expect = 6e-55
Identities = 100/168 (59%), Positives = 128/168 (76%), Gaps = 2/168 (1%)
Frame = +1
Query: 10 MSGKGNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHALEVSSALA 189
M+ KG+ EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 190 WFVLVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSRKEKDER 363
+ ++T ST+L+A AY+N KF LKH ++RKL AD++KMSRKEKDER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 364 ILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNYIV 507
ILWKKNEVADYEATT++IFYNN LFL +VI+ SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 30.3 bits (65), Expect = 5.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 361 RILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNY 501
R++W + T Y+I+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 5.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 361 RILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNY 501
R++W + T Y+I+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 5.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 361 RILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNY 501
R++W + T Y+I+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 5.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 361 RILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNY 501
R++W + T Y+I+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 5.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 361 RILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNY 501
R++W + T Y+I+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 5.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 361 RILWKKNEVADYEATTYAIFYNNALFLTIVILGSFYILRTFTPTVNY 501
R++W + T Y+I+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,082,965
Number of Sequences: 237096
Number of extensions: 1948169
Number of successful extensions: 8068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8064
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -