Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K21
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 29 0.57
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 29 0.57
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 27 3.0
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 27 3.0
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 26 5.3
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 25 7.0
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 25 9.2
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 25 9.2
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 9.2
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 9.2
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.2
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 29.1 bits (62), Expect = 0.57
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 177 MSWKIIPHWWNQRAYFEIVNKQFGQYLKLESNSDSDGE 290
MS + HWW+++ Y + + G LK+ S+ + E
Sbjct: 18 MSKSVRKHWWSRKGYHPTGSSKNGSRLKISSDENFQDE 55
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 255 LKLESNSDSDGEHKAFGGHEHDTWRHLWYFHPVVVGSETVFFIFNRN 395
L E N D + KAF HE R L+++HP ++G+ V F+ RN
Sbjct: 119 LNYEKNYDYFKKLKAF--HES---RGLYFYHPPIIGNRPVDFLRLRN 160
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +3
Query: 54 LGEQVKFINLRDANALKLEWGTDRDGDRGAYGDKNEWESDRMSWK---IIPHWWNQRAYF 224
L + + +N +A E G+D D ++ + +E++ D +W+ + P+ +
Sbjct: 63 LDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEFDDDFDTWEQVDLSPNKQEDKKDL 122
Query: 225 EIVNKQFGQYLKLESNSDS 281
IV + L ES S
Sbjct: 123 HIVTQHITPQLTKESKKGS 141
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -2
Query: 388 LKIKNTVSLPTTTGWKYHRCLHVSCSCPPNA----LCSPSLSEFDSSFK 254
LK KN T W +RCL ++ CPP A LCS ++ + +F+
Sbjct: 441 LKHKNPQVKTETLRW-LNRCLQLTDVCPPRASLETLCSLCVTLINDTFE 488
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 170 TLPFV-FVTVRTSIAISVCTPFEFKSICISEIDKL 69
T P + F+ VR + +C FK+I +SE+D L
Sbjct: 313 TSPHITFLDVREPVQFGICRLPLFKNIPLSEVDSL 347
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 336 WYFHPVVVGSETVFFIFNRNYNQALK 413
+YFHP V F+++R NQA K
Sbjct: 265 YYFHPFTVLETDENFLYSRPLNQAEK 290
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.2
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +3
Query: 141 AYGDKNEWESDRMSWKIIPH 200
A D N+W+ +R++W++ H
Sbjct: 208 AQNDGNDWKINRVTWRLEEH 227
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 9.2
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +3
Query: 168 SDRMSWKIIPHWW 206
+ R+++K +PHWW
Sbjct: 92 TSRITYKNVPHWW 104
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 485 CTLRMVRKTSQQLRCLYYVNEIYRWFV 565
CTL + TSQ L + N +YR+F+
Sbjct: 567 CTLEWLLITSQTDELLRFANLVYRFFL 593
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 395 VSVENKEHRLTPNYHWVEVPQMSPCVVFVSSK 300
+++ E L NY + +VP S CV +S +
Sbjct: 49 IAITRSESNLQSNYKYDQVPMYSICVFCLSGQ 80
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 582 PILLDIGIIVVYLF 623
P+LLD+G+ +VY F
Sbjct: 387 PVLLDLGVAMVYFF 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,106
Number of Sequences: 5004
Number of extensions: 55157
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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