Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K21
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0274 - 22626779-22627423                                         30   1.3  
08_02_1218 - 25359462-25359983                                         29   4.1  
08_02_0873 + 22100124-22100810                                         29   4.1  
08_02_0231 - 14575438-14575457,14575879-14576140                       29   4.1  
12_01_0989 + 10048036-10048125,10048232-10048816,10048930-100493...    28   5.4  
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502...    28   5.4  
10_08_0365 + 17224777-17224852,17224949-17224989,17225175-172252...    28   7.2  
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393...    28   7.2  
06_03_0416 + 20568087-20568702,20568767-20570313                       28   7.2  

>03_05_0274 - 22626779-22627423
          Length = 214

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 276 DSDGEHKAFGGHEHD-TWRHLWYF 344
           D+D EH  +GGH    +WR LW F
Sbjct: 71  DADDEHLYYGGHAPPFSWRKLWLF 94


>08_02_1218 - 25359462-25359983
          Length = 173

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 192 IPHWWNQRAYFEIVNKQFGQYLKLESNSDSDGEHKAFGGHEHDTWRHLWY 341
           +  WW     + ++N++      LE N D   E  A G H   TWRH++Y
Sbjct: 82  VRRWWGWGLGW-VMNRRPAFARDLEMNDD---EAAALGCHCRGTWRHVFY 127


>08_02_0873 + 22100124-22100810
          Length = 228

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 343 KYHRCLHVSCSCPPNALCSPSL 278
           K H CLH++C C   A+C P L
Sbjct: 207 KSHGCLHITCRC---AICDPRL 225


>08_02_0231 - 14575438-14575457,14575879-14576140
          Length = 93

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 126 DGDRGAYGDKNEWESDRMSWKIIPHW---WNQRAYFEIVNKQFGQYLKLESNSDSDGE 290
           D   G YG  +  +S R + +++ H    W Q+A  E   +       LE N+  DGE
Sbjct: 28  DAGLGGYGCAHSLKSRRQARQLMRHRAVAWRQKARLETQARMMRMVALLEKNAHVDGE 85


>12_01_0989 +
           10048036-10048125,10048232-10048816,10048930-10049331,
           10049419-10049477,10049711-10049801,10050243-10050329,
           10050723-10050791
          Length = 460

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 469 PPLCPQPRLSPSPSTYLPSFNAW 401
           PP  P+P LSP P    P   +W
Sbjct: 10  PPPPPEPALSPEPEILAPDHQSW 32


>04_04_0721 -
           27549212-27549646,27549739-27549962,27550074-27550227,
           27568477-27568821,27568899-27569152,27569257-27569383
          Length = 512

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 206 PPMRDYFPRHSITLPFVFVTVRTSIAISVCTPFE 105
           P +R YF     T  FVF+ V ++I+  + TP E
Sbjct: 267 PALRAYFAEFFSTFLFVFIAVGSTISARMLTPDE 300


>10_08_0365 +
           17224777-17224852,17224949-17224989,17225175-17225244,
           17225338-17225486,17225940-17226035,17226481-17226551,
           17227077-17227138,17227311-17227374,17227463-17227547,
           17227631-17227757,17228241-17228374,17228808-17229122
          Length = 429

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -2

Query: 343 KYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLF 233
           KY R        P   LC    SEF S F YC +  F
Sbjct: 224 KYDRISEKKMLTPAEVLCKSYPSEFTSYFHYCRSLRF 260


>08_02_0501 +
           17836948-17837373,17837857-17839184,17839270-17839380,
           17839719-17839998,17840275-17840396,17840451-17840556,
           17840814-17841020,17841130-17841255,17841719-17841817,
           17842265-17842456,17842555-17843073
          Length = 1171

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 489 HYAWYVRPHNS*DVYIMSMRYIVGSYSYRFLPILLDIGIIVVYLFTCI 632
           +YAWY+RP NS  +Y    R  + +  +    ++L + ++ + L+  I
Sbjct: 344 NYAWYLRPDNS-TMYFDPNRATLAAICHFLTSLMLYVCLVPISLYISI 390


>06_03_0416 + 20568087-20568702,20568767-20570313
          Length = 720

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -2

Query: 415 SFNAWL*F-LLKIKNTVSLPTTTGWKYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNC 239
           +++AW+   +  I +  + P   G +Y  C H  CSCP  A+    L E   +      C
Sbjct: 258 NYSAWVPSDIFDITDPCAYPLACG-EYGICSHGQCSCPDVAIGQSGLFELVDAKGVNHGC 316

Query: 238 LFTIS 224
             T S
Sbjct: 317 FLTSS 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,669,734
Number of Sequences: 37544
Number of extensions: 351699
Number of successful extensions: 1153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)