Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K21
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45675| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)                   28   7.4  
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)               27   9.7  
SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)                  27   9.7  
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_45675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -1

Query: 251 LSELLVHNFKVRPLVPPMRD----YFPRHSITLPFVFVTVRT 138
           + EL +H + VR  V P RD    Y+P  S T+   FV +RT
Sbjct: 139 ICELFLHEWNVR--VGPRRDASTVYYPCSSATMDSCFVLIRT 178


>SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)
          Length = 389

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -3

Query: 258 SNIVRIACSQFQSTPSGSTNEGLFSKTFYHSPIRFCHRTHLY 133
           ++++   C+++ +   G+TN   +  T +H  +R+ HR   Y
Sbjct: 157 TSVLSRRCAEWGNLCDGATNCDQWGNTDFHGALRYLHRVGYY 198


>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
          Length = 473

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 358 TTTGWKYHRCLHVSCSCPPNALCSPSLSEFDSSFKYC 248
           TT   ++H C H + S P  +L +P     D+ + +C
Sbjct: 48  TTADTRHHHCRHPAPSLPAPSLPAPGTITADTWYHHC 84


>SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)
          Length = 272

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 494 RMVRKTSQQLRCLYYVNEIYRW 559
           RM++K    +R + Y+N IY+W
Sbjct: 180 RMIKKYGAFVRLIDYINRIYKW 201


>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 6   IGIVRDYFPIHFRWILLGEQVKFINLRDANALKLEWGTDRDGDRGAYGDKNEWESDRM 179
           +G V +YF I F + +  EQV F N+ DA      + TD+ G    + +  E   D++
Sbjct: 120 VGQVLEYFSIDFEYSVRLEQVSFNNM-DARETDF-YSTDQRGFYNIFNETVETFKDKI 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,735,343
Number of Sequences: 59808
Number of extensions: 402104
Number of successful extensions: 1303
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)