Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K21
         (638 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125061-1|BAC86037.1|  202|Homo sapiens protein ( Homo sapiens ...    33   0.86 
AK122706-1|BAC85504.1|  814|Homo sapiens  ISOFORM.  protein.           32   1.5  

>AK125061-1|BAC86037.1|  202|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43071 fis, clone BRTHA3009291. ).
          Length = 202

 Score = 33.1 bits (72), Expect = 0.86
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -2

Query: 472 TPPLCPQPRLSPSPSTYLPSFNAWL*FLLKIKNTVSLPTTTGWKYHRCLHVSCSCPPNAL 293
           +PP  P P L P P    P   A+L  LL ++ +  LP ++   +   L +  S PP A 
Sbjct: 102 SPPPPPLPALLPLPCNTPPPLAAFLPLLLPLQPSTLLPCSSTLFFVALLLIQPSTPPLAA 161

Query: 292 CSPSL 278
             P L
Sbjct: 162 LLPPL 166


>AK122706-1|BAC85504.1|  814|Homo sapiens  ISOFORM.  protein.
          Length = 814

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = -2

Query: 490 CAGLSKTPPLCPQPRLSPSPSTYLPSFNAWL*FLLKIKNTVSLPTTTGWKYHRCL--HVS 317
           C  L   P  C  PR  P      PS +  L    +  +    P+ T    H CL    S
Sbjct: 698 CQRLPCPPAPCAHPRQGPC----CPSCDGCLYQGKEFASGERFPSPTA-ACHLCLCWEGS 752

Query: 316 CSCPPNALCSPSLSEFDSSFKYCPNC 239
            SC P A C+P+L  F +    CP+C
Sbjct: 753 VSCEPKA-CAPALCPFPARGDCCPDC 777


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,460,429
Number of Sequences: 237096
Number of extensions: 1930129
Number of successful extensions: 9540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9534
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)