Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K21
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g21930.1 68418.m02545 ATPase E1-E2 type family protein / halo...    32   0.37 
At5g44100.1 68418.m05396 casein kinase, putative similar to dual...    29   2.6  
At1g28375.1 68414.m03486 expressed protein                             29   2.6  
At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual...    29   2.6  
At5g39360.1 68418.m04768 circadian clock coupling factor-related...    29   3.4  
At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein co...    29   3.4  
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    28   4.5  
At5g11990.1 68418.m01402 proline-rich family protein contains pr...    28   6.0  
At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic ring...    28   6.0  
At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.0  
At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.0  
At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.0  
At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.0  
At4g28540.1 68417.m04083 casein kinase, putative similar to case...    27   7.9  

>At5g21930.1 68418.m02545 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein
           contains InterPro accession IPR001757: ATPase, E1-E2
           type; contains Pfam profiles PF00403:
           Heavy-metal-associated domain, PF00702: haloacid
           dehalogenase-like hydrolase
          Length = 883

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 372 PSHSQLPLGGSTTDVSMCRVRVLQTLYVHRHC-RSLILVSNIVRIACSQFQSTPS 211
           P  S L +  S   V+ C  R L+   + RHC R   LVSN V I+   F+ST S
Sbjct: 11  PPPSSLHIRPSKFLVNRCFPR-LRRSRIRRHCSRPFFLVSNSVEISTQSFESTES 64


>At5g44100.1 68418.m05396 casein kinase, putative similar to dual
           specificity kinase 1 gi|1216484|gb|AAB47968
          Length = 476

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -2

Query: 343 KYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLF 233
           KY R      S P   LC    SEF S F YC +  F
Sbjct: 224 KYDRISEKKVSTPIEVLCKNQPSEFVSYFHYCRSLRF 260


>At1g28375.1 68414.m03486 expressed protein
          Length = 102

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 315 VRVLQTLYVHRHCRSLILVSNIVRIACSQFQSTPSGSTNE 196
           VRVL+ + +H    S++L++  V +  S   + PS STN+
Sbjct: 4   VRVLEIMRLHVSNMSMVLITTFVIVIFSTVMARPSISTNK 43


>At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual
           specificity kinase 1 (ADK1) [Arabidopsis thaliana]
           gi|1216484|gb|AAB47968; supported by cDNA gi:18700076
           and gi:1216483.  Note: differences between cDNAs in the
           11th exon, possibly due to errors or alternative
           splicing.
          Length = 471

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 343 KYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLF 233
           KY R      + P   LC    SEF S F+YC +  F
Sbjct: 224 KYDRISEKKVATPIEVLCKNQPSEFVSYFRYCRSLRF 260


>At5g39360.1 68418.m04768 circadian clock coupling factor-related
           similar to circadian clock coupling factor ZGT
           [Nicotiana tabacum] GI:14210079
          Length = 249

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 343 KYHRCLH-VSCSCPPNALCSPSLSEFDSSFKYCPNCLFTISKYALWF 206
           K +RC+H  +C C    L    L        + PN + T+S    WF
Sbjct: 5   KQYRCIHSATCHCTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWF 51


>At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 638

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 261 LESNSDSDGEHKAFGGHEHDTWRHLWYFHPVVVGSETV 374
           L  +SD DG  K  GGH +D      Y  P+++ S  +
Sbjct: 170 LRPSSDGDGGGKPHGGHHNDDAETAAYTLPILIPSRVL 207


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 302 KRFMXXXXXXXXXXFQILSELLVHNFKVRPLVPPMRDYFPRHSITLPF-VFVTVRTSIAI 126
           +RF+           + ++EL  H   V  +V  + +YF  +S T PF +F  VR  + I
Sbjct: 778 ERFLESMNSFLNKGEKEITELQSHGDNVMKMVKEVTEYFHGNSETHPFRIFAVVRDFLTI 837


>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 490 CAGLSKTPPLCPQPRLSPSPSTYLP 416
           C  +   PP  P P +SP PS  LP
Sbjct: 38  CPTICSPPPSKPSPSMSPPPSPSLP 62


>At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic
           ring-opening dioxygenase family contains Pfam PF02900:
           Catalytic LigB subunit of aromatic ring-opening
           dioxygenase
          Length = 269

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 135 RGAYGDKNEWESDRMSWKIIPHWWNQRAY 221
           +G YGD NEWE    + K + H W +  Y
Sbjct: 204 QGRYGDVNEWEEKAPNAK-MAHPWPEHLY 231


>At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 196

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 378 RTPSHSQLPLGGSTTDVSMCRVRVLQTLYVHRHCRSLILVSN 253
           R+PS S+ PL  S   ++          YVHR+ R++ LV N
Sbjct: 150 RSPSLSKPPLPPSPPRITTVTKNPCYGCYVHRNSRNIYLVHN 191


>At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 218

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 378 RTPSHSQLPLGGSTTDVSMCRVRVLQTLYVHRHCRSLILVSN 253
           R+PS S+ PL  S   ++          YVHR+ R++ LV N
Sbjct: 172 RSPSLSKPPLPPSPPRITTVTKNPCYGCYVHRNSRNIYLVHN 213


>At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 196

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 378 RTPSHSQLPLGGSTTDVSMCRVRVLQTLYVHRHCRSLILVSN 253
           R+PS S+ PL  S   ++          YVHR+ R++ LV N
Sbjct: 150 RSPSLSKPPLPPSPPRITTVTKNPCYGCYVHRNSRNIYLVHN 191


>At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 196

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 378 RTPSHSQLPLGGSTTDVSMCRVRVLQTLYVHRHCRSLILVSN 253
           R+PS S+ PL  S   ++          YVHR+ R++ LV N
Sbjct: 150 RSPSLSKPPLPPSPPRITTVTKNPCYGCYVHRNSRNIYLVHN 191


>At4g28540.1 68417.m04083 casein kinase, putative similar to casein
           kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395;
           contains protein kinase domain, Pfam:PF00069
          Length = 479

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 343 KYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLF 233
           KY R      S P   LC     EF S F+YC +  F
Sbjct: 228 KYDRISEKKVSTPIEVLCKSYPPEFVSYFQYCRSLRF 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,608
Number of Sequences: 28952
Number of extensions: 287092
Number of successful extensions: 966
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)