Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K20
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 31 0.098
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 29 0.30
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 27 1.2
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 27 1.2
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 1.6
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 1.6
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 2.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 2.1
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 27 2.1
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 2.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 2.8
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 3.7
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.7
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 8.5
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 8.5
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 8.5
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 31.1 bits (67), Expect = 0.098
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 351 QRSGSVRTILTMIGSTSLDSFTISERLWPSTRSRNGAWSVTH 476
Q S T + S + S T+S WP+T +GAWS T+
Sbjct: 40 QNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTY 81
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 29.5 bits (63), Expect = 0.30
Identities = 31/130 (23%), Positives = 58/130 (44%)
Frame = +2
Query: 8 KWTRENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDM 187
K +R+ + + P SP + +P + E + K + F +Y+V++ D + R RK +
Sbjct: 188 KLSRDELYL-PISPNNAQEPKFSVLDE--WTKKMVANFEEYSVEDVDKRRERNRK----L 240
Query: 188 HTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIR 367
+ V+ D W +F KS I+ + DE LP+ +H+ + E +
Sbjct: 241 SEPLLVNGRYRVRDRWAQFR--KSEIEKPY-RFTFFTDE------LPSTIHSHEMWELVH 291
Query: 368 EDHPDDDWFH 397
+ +D FH
Sbjct: 292 DGQSFEDLFH 301
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 17 RENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVR 169
+ N KI P SV+DP+ + E+ + R VD+N P+ R R
Sbjct: 147 KNNEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPLFYRYR 197
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 1.2
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Frame = +2
Query: 20 ENMK--IKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMR---VRKTYYD 184
EN+K IK PV+ P L +E+YE F D EN IK R + + +Y+
Sbjct: 54 ENLKKNIKVLVPVNEK-PQKLDGKQEEYEIIVKLFFLD---GENIDIKKREETLSQVFYN 109
Query: 185 MHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDP 313
+H +DFV + ++ K + + ++ D +DE P
Sbjct: 110 LHMLFGIDFVSTLVVSFPHITFLKESGNSSSNEIYDSIDEIPP 152
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 139 IHRVITERFQRFVLVFLLWSE*KRRVHNGHRGFWF 35
IH++I++R Q+F FL W E + V+ + G +F
Sbjct: 35 IHQLISQRNQKFQANFLEW-ENSKLVYRRYAGLYF 68
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 27.1 bits (57), Expect = 1.6
Identities = 20/84 (23%), Positives = 35/84 (41%)
Frame = +2
Query: 17 RENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTN 196
R+N+ P P + PS +RP D P + D ++ T + ++
Sbjct: 393 RKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNT-QTDSYFIQRENTPTNHNSI 451
Query: 197 MTVDFVKGKMDNWLKFNHFKSTIK 268
T+ K MD +L+F+ S +K
Sbjct: 452 PTIQLEKSSMD-FLRFDPPPSAVK 474
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 2 HSKWTRENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYT 133
H+ E + PE P+S+ + +L + YE +E + YT
Sbjct: 600 HTNPNAEQGDVIPEKPMSIKERMNMLMTKTDYEKPKVEGYGRYT 643
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/46 (23%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 74 LLRPE-EKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVD 208
+++P+ +K++ + LEA ++ ++++ M + ++ +M TNM +D
Sbjct: 674 VVKPKRKKHKKQRLEAGEEFDSEDDNSDDMDIEESEEEMDTNMVID 719
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 26.6 bits (56), Expect = 2.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 120 SVITRWMKTIRSRCESVKPIMICTR 194
+VIT+W+ + S C VK +++ +
Sbjct: 102 NVITKWLPEVSSNCPGVKLVLVALK 126
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 230 NWLKFNHFKSTIKDALIKLNDLVDESD 310
N LKF H ST+ D + +D VD D
Sbjct: 609 NLLKFVHLVSTVDDLQVVEDDAVDRHD 635
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 2.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 194 NMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIRE 370
NM + +VK K D W HF I+ VD++ NL + + AE+ R+
Sbjct: 760 NMILRYVKSKADWWTSVAHFNR----ERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQ 814
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 436 GHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVS 317
G++LSE +N N + + ++ DP+R +H + S
Sbjct: 936 GNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYS 975
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/46 (21%), Positives = 21/46 (45%)
Frame = +2
Query: 20 ENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIK 157
++ K+ P + +D L P +Y+ P + DY +P++
Sbjct: 148 DSQKLSPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEPVE 193
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 250 VVEFQPIIHFTLDEINCHVRVHIIIGFTDSHLDRIVF 140
V EF+ +DEI+ ++ I++G T +L ++F
Sbjct: 74 VPEFERDASRVIDEIHSQGKIPIVVGGTHYYLQSLLF 110
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 320 NLPNIVHAFQTAERIR-EDHPDDDW 391
N N HAFQTAE + D D DW
Sbjct: 262 NSHNHDHAFQTAEAVGVADSIDPDW 286
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 24.6 bits (51), Expect = 8.5
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 29 KIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNM 199
KI S + + + E D E +D V E+D I ++ R ++TN+
Sbjct: 317 KIASASDIGASEDEEDVDMHESISDNENEGIKDIPVAEDDDITLKFRAAKSKINTNI 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,307
Number of Sequences: 5004
Number of extensions: 47917
Number of successful extensions: 150
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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