Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K20
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...   127   5e-30
At2g19800.1 68415.m02313 expressed protein similar to myo-inosit...   120   6e-28
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit...   119   1e-27
At4g26260.1 68417.m03779 expressed protein similar to myo-inosit...   118   3e-27
At1g03760.1 68414.m00356 prefoldin subunit family protein contai...    28   3.1  
At5g21900.1 68418.m02539 expressed protein                             28   4.1  
At2g42955.1 68415.m05326 hypothetical protein                          28   4.1  
At1g29470.1 68414.m03605 dehydration-responsive protein-related ...    28   4.1  
At5g08240.1 68418.m00967 expressed protein                             27   5.4  
At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiqu...    27   5.4  
At5g66630.1 68418.m08398 LIM domain-containing protein contains ...    27   9.5  

>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score =  127 bits (306), Expect = 5e-30
 Identities = 63/132 (47%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
 Frame = +2

Query: 119 FRDYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLV 298
           FRDY  D     +  V + Y   H   TVDFV+   + + K N  + +I +    LN+ +
Sbjct: 51  FRDY--DAESERRRGVEEFYRVNHIGQTVDFVRKMREEYEKLNRTEMSIWECCELLNEFI 108

Query: 299 DESDPDTNLPNIVHAFQTAERIREDHPDDDWFHLIGLIHDLGKVM---AFYEEPEWCVVG 469
           DESDPD + P I H  QTAE IR+D+PD+DW HL GLIHDLGKV+   +F E P+W VVG
Sbjct: 109 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLLHSSFGELPQWAVVG 168

Query: 470 DTFAVGCKWGKS 505
           DTF VGC + +S
Sbjct: 169 DTFPVGCAFDES 180


>At2g19800.1 68415.m02313 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score =  120 bits (289), Expect = 6e-28
 Identities = 61/128 (47%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
 Frame = +2

Query: 116 AFRDYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDL 295
           +FRDY   E++  +  V + Y   H + T DFVK     + K N  + +I +    LN++
Sbjct: 55  SFRDYENGESER-QQGVEEFYRMQHIHQTYDFVKKMRKEYGKLNKMEMSIWECCELLNNV 113

Query: 296 VDESDPDTNLPNIVHAFQTAERIREDHPDDDWFHLIGLIHDLGKVMAFYE---EPEWCVV 466
           VDESDPD + P I H  QTAE IR D+PD+DW HL  LIHDLGKV+   E    P+W VV
Sbjct: 114 VDESDPDLDEPQIQHLLQTAEAIRRDYPDEDWLHLTALIHDLGKVLLLPEFGGLPQWAVV 173

Query: 467 GDTFAVGC 490
           GDTF VGC
Sbjct: 174 GDTFPVGC 181


>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 314

 Score =  119 bits (287), Expect = 1e-27
 Identities = 67/159 (42%), Positives = 88/159 (55%), Gaps = 3/159 (1%)
 Frame = +2

Query: 38  PESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVDFVK 217
           P S +S  D  + L PE     +    FRDYT D N   +  V   Y   HTN T+DFV+
Sbjct: 30  PMSKIS-SDDEVFLAPEMNAFGRQ---FRDYT-DTNSERQKSVEHFYATQHTNQTLDFVQ 84

Query: 218 GKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDDWFH 397
                + K +     I +      ++VDESDPD + P I H  Q+AE IR+D+P++DW H
Sbjct: 85  KMRSEYGKLDKMVMNIWECCELSKEVVDESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLH 144

Query: 398 LIGLIHDLGKVMA---FYEEPEWCVVGDTFAVGCKWGKS 505
           L  LIHDLGKV+    F   P+W VVGDTF VGC + +S
Sbjct: 145 LTALIHDLGKVLTLPQFGGLPQWAVVGDTFPVGCAFDES 183


>At4g26260.1 68417.m03779 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score =  118 bits (283), Expect = 3e-27
 Identities = 61/132 (46%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
 Frame = +2

Query: 119 FRDYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLV 298
           FRDY V+     +  V + Y   H N TVDFVK     + K +    +I +    LN++V
Sbjct: 57  FRDYDVESER--QKGVEEFYRLQHINQTVDFVKKMRAEYGKLDKMVMSIWECCELLNEVV 114

Query: 299 DESDPDTNLPNIVHAFQTAERIREDHPDDDWFHLIGLIHDLGKVMA---FYEEPEWCVVG 469
           DESDPD + P I H  Q+AE IR+D+P++DW HL  LIHDLGKV+    F   P+W VVG
Sbjct: 115 DESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVITLPQFGGLPQWAVVG 174

Query: 470 DTFAVGCKWGKS 505
           DTF VGC + +S
Sbjct: 175 DTFPVGCAFDES 186


>At1g03760.1 68414.m00356 prefoldin subunit family protein contains
           similarity to Swiss-Prot:O94763 RNA polymerase II
           subunit 5-mediating protein (RPB5-mediating protein)
           [Homo sapiens]; contains Pfam profile PF02996: Prefoldin
           subunit
          Length = 391

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 86  EEKYEDKPLEAFR-DYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKM 226
           EEK  +K +E  R    VDEND +   V+K    +H N+ V F  GKM
Sbjct: 27  EEKIGEKRVEMNRLQQYVDENDNLINLVKKLPDQLHHNVMVPF--GKM 72


>At5g21900.1 68418.m02539 expressed protein
          Length = 544

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 321 LVSGSDSSTKSFSLMRASFIVDLKWLNFNQLS 226
           LVS +D   +SF + R+S + DL   N N+++
Sbjct: 345 LVSVNDGVVRSFFMFRSSILTDLSLANCNEVT 376


>At2g42955.1 68415.m05326 hypothetical protein
          Length = 213

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 346 ESVHNVRQVSVRIGFIDQIVQLDESILYCRLEVVEFQPI 230
           +  HNVR       + DQ+V LD+ IL  +   V F+P+
Sbjct: 78  QEFHNVRSRPTHATYADQLVNLDDQILPWK---VHFRPV 113


>At1g29470.1 68414.m03605 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
 Frame = +2

Query: 38  PES-PVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVD-- 208
           PES P  V      L  +E    KP +   D+T D ++  K  V K+Y +    M +D  
Sbjct: 563 PESWPERVETVPQWLDSQEGVYGKPAQ--EDFTAD-HERWKTIVSKSYLN---GMGIDWS 616

Query: 209 FVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNI 334
           +V+  MD    +  F + +KD  + + ++V    PDT LP I
Sbjct: 617 YVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDT-LPII 657


>At5g08240.1 68418.m00967 expressed protein 
          Length = 258

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 5   SKWTRENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPI 154
           SK+  +N +IKP        P+  +  E   + KPL   R  T  +N P+
Sbjct: 58  SKFRLKNSEIKPSPIEETEKPTSRVEDETDDKQKPLSVIRRITDRKNIPV 107


>At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3,
           ubiquitin ligase; contains similarity to
           anaphase-promoting complex subunit 2 GI:6180009 from
           [Homo sapiens]
          Length = 865

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 164 VRKTYYDMHTNM-TVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVH 340
           + KT YD+ T + TV+         LK +  +++++   I LNDL+D    +T   NI  
Sbjct: 566 LNKTDYDIDTEIRTVEL--------LKIHFGEASMQRCEIMLNDLIDSKRVNT---NIKK 614

Query: 341 AFQTAERIRED 373
           A QT   +RE+
Sbjct: 615 ASQTGAELREN 625


>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
           similarity to Pfam profile PF00412: LIM domain
          Length = 702

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 23  NMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDE 142
           NMKI+ E P+ ++   LL + EEK ++      R Y + E
Sbjct: 490 NMKIEKEFPLILVRKELLNKKEEKIDNHYEVLIRAYCMSE 529


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,720
Number of Sequences: 28952
Number of extensions: 250521
Number of successful extensions: 746
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)