Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K19
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.4  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    26   2.4  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   3.1  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    25   3.1  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    24   7.2  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    24   7.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.5  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 312 VLPWSVLWSTRTTATYKTV 368
           VLPWS +WS  +T + +T+
Sbjct: 818 VLPWSAMWSIISTQSVRTM 836


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 210 ISFRQRYWEACSTCTSPSCALEVN 281
           + + +++ + C  CTS SCA  +N
Sbjct: 356 VPYSRQFTQRCPGCTSESCAERIN 379


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 239 SFPVSLSEAYSYMCSDLPRELPPFLIWSG 153
           S PV+++E Y Y  + + REL P + W G
Sbjct: 147 SEPVNVNEDYLYSVNVVSRELSP-IYWDG 174


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -2

Query: 188 PRELPPFLIWSGDDLPFR---TCPSPNPWQCNVCQA 90
           P E  P   +   + PF+   + P+PNPW  N  QA
Sbjct: 287 PAEQAPENPFRDPENPFKDPASAPAPNPWSINDVQA 322


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 44  PNVGVVCLPLKDEPAMPGT 100
           PNVGV  L L+++P + GT
Sbjct: 469 PNVGVGKLELREDPKLLGT 487


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 285 PGSPPAHMKDSCR*NKLPS 229
           P +PP H+KD+ R +  PS
Sbjct: 189 PLNPPVHLKDNIRNSATPS 207


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 256 LVQVEQASQY-RCLKLIHTCVPIYHGNFHLF 167
           L Q E +  Y +CLK +H   P++  N +L+
Sbjct: 82  LYQRELSEIYNKCLKALHPFYPVFEVNSNLY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,174
Number of Sequences: 5004
Number of extensions: 44691
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)