Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K19
(390 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g08250.1 68417.m01361 scarecrow transcription factor family p... 30 0.48
At3g21000.1 68416.m02655 expressed protein ; expression supporte... 29 1.5
At3g18090.1 68416.m02300 DNA-directed RNA polymerase family prot... 28 2.6
At2g25150.1 68415.m03008 transferase family protein similar to 1... 28 2.6
At5g51105.1 68418.m06337 expressed protein 27 3.4
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family... 27 4.5
At4g20040.1 68417.m02933 expressed protein C70DMY30S 27 5.9
At5g61040.1 68418.m07660 expressed protein 26 7.8
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 26 7.8
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 26 7.8
At1g71240.1 68414.m08222 expressed protein contains Pfam profile... 26 7.8
At1g03760.1 68414.m00356 prefoldin subunit family protein contai... 26 7.8
>At4g08250.1 68417.m01361 scarecrow transcription factor family
protein SCARECROW - Arabidopsis thaliana, PID:g1497987
Length = 483
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 279 NPARTLARETEVLPWSVLWSTRTTATYKTVLSLGVW 386
NPAR + PW W TR TA V S W
Sbjct: 383 NPARGFVERVFIGPWVANWLTRITANDAEVESFASW 418
>At3g21000.1 68416.m02655 expressed protein ; expression supported
by MPSS
Length = 405
Score = 28.7 bits (61), Expect = 1.5
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +2
Query: 2 DISILFLKSPMEMTPNVGVVCLPLKDEPA----MPGTRCIAMGWGKDKFG-KEGRHQTIL 166
DI I+ +P+ MTP V + A + GT + G G K KEG+ +TI
Sbjct: 278 DIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIR 337
Query: 167 KKVEVPVVNRN 199
+ VP +NRN
Sbjct: 338 NVIFVPGLNRN 348
>At3g18090.1 68416.m02300 DNA-directed RNA polymerase family protein
similar to SP|P38420 DNA-directed RNA polymerase II 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
2) {Arabidopsis thaliana}; contains Pfam profiles
PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
domain 3, PF04566: RNA polymerase Rpb2 domain 4,
PF04567: RNA polymerase Rpb2 domain 5
Length = 1038
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 212 KLQTTILGSLFYLHESFMCAGGEPGKDTCK 301
K Q ++GS+ + +S +C E GK+ CK
Sbjct: 36 KKQDILIGSIPVMVKSVLCKTSEKGKENCK 65
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 35 EMTPNVGVVCLPLKDEPAMPGTRCIAMGWGKDKFGKEGRHQTILKKV 175
E T +VG++ P K +P+M G + M +D + R +KK+
Sbjct: 409 ESTVHVGMILKPSKSDPSMEGGVKVIMKLPRDAMVEFKREMATMKKL 455
>At5g51105.1 68418.m06337 expressed protein
Length = 123
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 147 PSFPNLSFPQPMAMQRVPGIAGS 79
P FP + FP P + PG+AGS
Sbjct: 24 PQFPPIMFPFPNPFKPSPGMAGS 46
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 310
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 315 EPPSPLQVSLPGSPPAH 265
+PPSP Q + P SPP H
Sbjct: 27 QPPSPPQPTNPSSPPPH 43
>At4g20040.1 68417.m02933 expressed protein C70DMY30S
Length = 483
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 20 LKSPMEMTPNVGVVCLPLKDEPAMPGTRCIAMGWGKDKFGKEGRHQTILK 169
++ + +TP + V P P M G +G+G D G + IL+
Sbjct: 41 IQERLAVTPTLSPVSSPSSHSPKMVGKVIYPIGYGADPTGGQDSSDAILE 90
>At5g61040.1 68418.m07660 expressed protein
Length = 590
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 303 ETEVLPWSVLWSTRTTATYKT 365
E++ WS LW TR TYK+
Sbjct: 423 ESKKKSWSRLWETREVMTYKS 443
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373:
jmjC domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 26.2 bits (55), Expect = 7.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 351 RLSSYSIGQTKGEPPSPLQVSLPGSPPAHMKDSCR 247
RL+S G +KG S L+++LP P + DSCR
Sbjct: 701 RLTSEQNGLSKGGKSSLLEIALPFIPRSD-DDSCR 734
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 157 LVTTFLSELVLPPTHGNATCARHSRFVFQREADYSYIRCHFH 32
+ TTF E + P HG ATC + ++ + + + RC +
Sbjct: 1 MTTTF--EFLQPRIHGFATCCSSNSLLYSKASRFFNDRCRVY 40
>At1g71240.1 68414.m08222 expressed protein contains Pfam profile:
PF04842 plant protein of unknown function (DUF639)
Length = 824
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 17 FLKSPMEMTPNVGVVCLPLKDEPAMPGTR 103
FL+ EM P V+ LP +E + P T+
Sbjct: 783 FLRERWEMVPAAPVIVLPFVNEESTPATQ 811
>At1g03760.1 68414.m00356 prefoldin subunit family protein contains
similarity to Swiss-Prot:O94763 RNA polymerase II
subunit 5-mediating protein (RPB5-mediating protein)
[Homo sapiens]; contains Pfam profile PF02996: Prefoldin
subunit
Length = 391
Score = 26.2 bits (55), Expect = 7.8
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 13 SIPEESNGNDTECRSSLPPSERRTGYAWHTLHCHGLGEGQVRKGRSSPDHIKKGGSSRG 189
S+P +++G+ + R S P E + H H + + + R ++ K G SRG
Sbjct: 253 SVPNKASGHSSSPRVSEPRVEAKIIQVLPETHPHKDLDDPLNRIRPMAQYLSKEGQSRG 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,850,250
Number of Sequences: 28952
Number of extensions: 265051
Number of successful extensions: 828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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