Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K17
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   0.19 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   2.3  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    24   3.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   3.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    24   3.1  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    23   4.0  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   5.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    23   5.3  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    23   7.0  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    23   7.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    23   7.0  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    22   9.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    22   9.3  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 177 TDPTITKVLRTSYMRGPPESPLHASSPGLPPAH 79
           +DP  +   +T+Y      SPLHA+S  LPP+H
Sbjct: 28  SDPNASLPPQTAYYA----SPLHANSVSLPPSH 56


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 144  SYMRGPPESPLHASSPG--LPPAHSCSLVITSASPP 43
            S  + PP S   A++P   LPP+ S    + S +PP
Sbjct: 1500 SVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP 1535


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 165 ITKVLRTSYMRGPPESPLHASSPGLPPAHS 76
           I +V+  +  + PP +PL   +P LP A S
Sbjct: 794 IKEVIDGNPFKAPPPAPLPPPAPPLPTAMS 823


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 150 RTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 43
           R S + G   +P H+ SP  PP    S    S+SPP
Sbjct: 432 RPSLVLGTSVNP-HSLSPSQPPVVVPSNTTISSSPP 466


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 66  LRSNCVRVVNPVKT 107
           +R+NC R + PVKT
Sbjct: 529 VRANCSRTIEPVKT 542


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
 Frame = -2

Query: 144 SYMRGPPESPLHASSPGL-----PPAHSCSLVITSASPPRNVL 31
           SY+   P    HA SPG+     P  HS S      S P++ L
Sbjct: 222 SYLFSAPSDTSHAVSPGMLTFVTPSPHSHSPAGHQQSTPKSTL 264


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 147 TSYMRGPPESPLHASSPGLPPAHSCSLVITSASPPRN 37
           T+Y +   ++  + +SP  PP +  ++++   SP  N
Sbjct: 149 TAYQKQKRKTASYTNSPVTPPINDKNILLPEQSPLSN 185


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 66  LRSNCVRVVNPVKT 107
           LR+ C+R++N +KT
Sbjct: 791 LRTKCLRIINQMKT 804


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 156 VLRTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 43
           +  ++Y+R   +S + A  P  PP  +     +S++PP
Sbjct: 188 IFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPP 225


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 171 PTITKVLRTSYMRGPPESPLHASSP 97
           P   +++  SY+R    SPLH SSP
Sbjct: 331 PAARRLVARSYLR----SPLHGSSP 351


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 87  VVNPVKTRAGATPVD 131
           +V+P K   G+TPVD
Sbjct: 298 IVSPAKNIVGSTPVD 312


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 111 HASSPGLPPAHSCSLVITSASPPRNVLCAA*HLSLS 4
           H++ PGL   H  S+   +A  P N + +  HL ++
Sbjct: 254 HSAFPGLDVYHDDSVSAGAAFIPHNPMDSIDHLDVN 289


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 171 PTITKVLRTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 43
           PT T    T+    P  S    +S  +PP  + +  +T   PP
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPP 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,955
Number of Sequences: 5004
Number of extensions: 12194
Number of successful extensions: 38
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)