BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_K16 (257 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 88 2e-19 SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 0.95 SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 1.3 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 1.7 SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 25 1.7 SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 23 5.1 SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 23 5.1 SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 23 6.7 SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 23 6.7 SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 23 8.9 SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 23 8.9 >SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces pombe|chr 2|||Manual Length = 56 Score = 88.2 bits (209), Expect = 2e-19 Identities = 37/54 (68%), Positives = 42/54 (77%) Frame = +3 Query: 45 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206 M H N+W+SHPR+YG+GSR C R GLIRKYGLNI RQ FREYA+DIGF K Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54 >SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharomyces pombe|chr 3|||Manual Length = 635 Score = 25.8 bits (54), Expect = 0.95 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +3 Query: 9 LLGLEKTN*FYIMGHANIWYSHPRRY 86 + G +K N FY + N WY RY Sbjct: 234 IYGFKKANQFYTVDQYNTWYGPYSRY 259 >SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|Schizosaccharomyces pombe|chr 3|||Manual Length = 624 Score = 25.4 bits (53), Expect = 1.3 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 98 PFMPSLLKQTWSHS*IWLEYLQ 163 PF S L++TW++ W E LQ Sbjct: 396 PFSGSTLQETWTNLYYWREMLQ 417 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 25.0 bits (52), Expect = 1.7 Identities = 10/36 (27%), Positives = 23/36 (63%) Frame = -1 Query: 227 LNLSLVQLFKSNIMRILSEALPADIQAIFTNETMSV 120 L +SL+Q+F+S++ + + E++ D+ + E S+ Sbjct: 1593 LKISLIQIFRSHLWQKIHESVVWDLCQVLDQELESL 1628 >SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 539 Score = 25.0 bits (52), Expect = 1.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 87 GQGSRSCRACSNRHGLIRKYGLNICRQC 170 G GS A N+ G + +GLNI RQC Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311 >SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 743 Score = 23.4 bits (48), Expect = 5.1 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = +3 Query: 6 PLLGLEKTN*FYIMGHANIWYSHPRRYGQGSRSCRA-CSNRHGLIRKYGLNI 158 P+L ++ F I W + R GQGS +A S+ L +K LN+ Sbjct: 128 PILPIDSAGGFLIEWWNVFWDIYNARRGQGSEPAKAYMSHISNLRKKSRLNL 179 >SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosaccharomyces pombe|chr 1|||Manual Length = 155 Score = 23.4 bits (48), Expect = 5.1 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -2 Query: 160 QIFKPYLRMRPCLFEQARHEREPCP 86 Q+FKP +++R L + + REP P Sbjct: 98 QVFKPSIKLRSVLEQILQLLREPNP 122 >SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Schizosaccharomyces pombe|chr 1|||Manual Length = 164 Score = 23.0 bits (47), Expect = 6.7 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = -2 Query: 112 ARHEREPCPYL 80 A H R+PCPY+ Sbjct: 4 ADHTRDPCPYV 14 >SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizosaccharomyces pombe|chr 1|||Manual Length = 209 Score = 23.0 bits (47), Expect = 6.7 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -2 Query: 202 LNPISCAYSRKHCLQIFKPYLRMRP 128 ++ I C+ S K C + PYL ++P Sbjct: 47 IDQIFCS-SMKRCRETIAPYLELKP 70 >SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|Schizosaccharomyces pombe|chr 1|||Manual Length = 2397 Score = 22.6 bits (46), Expect = 8.9 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = -3 Query: 123 CLSRLGMNGNPARIYVGVNTRYLRDP 46 CL LG++G +++V +N R P Sbjct: 698 CLPELGLDGYGYKLFVPINEYIPRRP 723 >SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pombe|chr 2|||Manual Length = 387 Score = 22.6 bits (46), Expect = 8.9 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -2 Query: 160 QIFKPYLRMRPCLFEQARHEREPCPYLRGCE 68 +I + + +RP LFE + E P P L+ E Sbjct: 83 EILESFKVIRPTLFEFLKVENVPKPVLQAPE 113 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,151,883 Number of Sequences: 5004 Number of extensions: 21801 Number of successful extensions: 63 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 63 length of database: 2,362,478 effective HSP length: 60 effective length of database: 2,062,238 effective search space used: 51555950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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