Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K16
(257 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 88 2e-19
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 0.95
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 1.7
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 25 1.7
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 23 5.1
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 23 5.1
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 23 6.7
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 23 6.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 23 8.9
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 23 8.9
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 88.2 bits (209), Expect = 2e-19
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +3
Query: 45 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
M H N+W+SHPR+YG+GSR C R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 0.95
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 9 LLGLEKTN*FYIMGHANIWYSHPRRY 86
+ G +K N FY + N WY RY
Sbjct: 234 IYGFKKANQFYTVDQYNTWYGPYSRY 259
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 1.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 98 PFMPSLLKQTWSHS*IWLEYLQ 163
PF S L++TW++ W E LQ
Sbjct: 396 PFSGSTLQETWTNLYYWREMLQ 417
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 1.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -1
Query: 227 LNLSLVQLFKSNIMRILSEALPADIQAIFTNETMSV 120
L +SL+Q+F+S++ + + E++ D+ + E S+
Sbjct: 1593 LKISLIQIFRSHLWQKIHESVVWDLCQVLDQELESL 1628
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 87 GQGSRSCRACSNRHGLIRKYGLNICRQC 170
G GS A N+ G + +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.4 bits (48), Expect = 5.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 6 PLLGLEKTN*FYIMGHANIWYSHPRRYGQGSRSCRA-CSNRHGLIRKYGLNI 158
P+L ++ F I W + R GQGS +A S+ L +K LN+
Sbjct: 128 PILPIDSAGGFLIEWWNVFWDIYNARRGQGSEPAKAYMSHISNLRKKSRLNL 179
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 160 QIFKPYLRMRPCLFEQARHEREPCP 86
Q+FKP +++R L + + REP P
Sbjct: 98 QVFKPSIKLRSVLEQILQLLREPNP 122
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 23.0 bits (47), Expect = 6.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 112 ARHEREPCPYL 80
A H R+PCPY+
Sbjct: 4 ADHTRDPCPYV 14
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 202 LNPISCAYSRKHCLQIFKPYLRMRP 128
++ I C+ S K C + PYL ++P
Sbjct: 47 IDQIFCS-SMKRCRETIAPYLELKP 70
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 123 CLSRLGMNGNPARIYVGVNTRYLRDP 46
CL LG++G +++V +N R P
Sbjct: 698 CLPELGLDGYGYKLFVPINEYIPRRP 723
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 22.6 bits (46), Expect = 8.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 160 QIFKPYLRMRPCLFEQARHEREPCPYLRGCE 68
+I + + +RP LFE + E P P L+ E
Sbjct: 83 EILESFKVIRPTLFEFLKVENVPKPVLQAPE 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,883
Number of Sequences: 5004
Number of extensions: 21801
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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