Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K16
         (257 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22175| Best HMM Match : HemolysinCabind (HMM E-Value=1.6e-08)       28   1.0  
SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)                   26   4.2  
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)                    25   7.4  
SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.4  
SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  
SB_11783| Best HMM Match : C4 (HMM E-Value=1)                          25   9.7  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  
SB_16521| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  

>SB_22175| Best HMM Match : HemolysinCabind (HMM E-Value=1.6e-08)
          Length = 298

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 90  QGSRSCRACSNRHGLIRKYGLNICRQCFR 176
           Q ++ C AC +R  L+   G N C   FR
Sbjct: 183 QNNKGCNACDSRFRLVFSKGCNACDSRFR 211


>SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 87  GQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 212
           G+ +R   AC +   ++   G N+CR C   + +D   + +D
Sbjct: 59  GESARF-EACCDGQDMVNDNGANVCRNCGVHHGYDYAVEYVD 99


>SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)
          Length = 335

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 69  SHPRRYGQGSRSCRACSNRH--GLIRKYGLNICRQC 170
           + P R+ +   SCR C  +H  G    Y   ICR+C
Sbjct: 275 ARPSRFDRNQNSCRFCGLQHDRGNCPAYNA-ICRRC 309


>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 434

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 120 LSRLGMNGNPARIYVGVNTRYLR-DP*CKISLFSRD 16
           L  L   G P RIY G+   YL+  P    SL  RD
Sbjct: 172 LKILWKQGGPRRIYAGLTASYLKVMPAAATSLLVRD 207


>SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 134 HS*IWLEYLQAVLPRVCA*YWI 199
           H  +W  YLQA+ P + A  WI
Sbjct: 329 HIYLWQNYLQAIQPHLQAFLWI 350


>SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
 Frame = +3

Query: 78  RRYGQGSRSCR--ACSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 212
           R Y     S R  AC      +   G NICR C   + +D   +  D
Sbjct: 19  REYVTKGESVRFEACFGMQDRVNDNGANICRNCGVHHGYDYAVEWFD 65


>SB_11783| Best HMM Match : C4 (HMM E-Value=1)
          Length = 565

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 144 YGLNICRQCFREYAHDIGFKK 206
           Y  ++C+ CFR + HD   +K
Sbjct: 440 YRQHLCKVCFRAWMHDARMEK 460


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 84  YGQGSRSC--RACSNRHGLIRKYGLNICRQCFREYAHD 191
           Y +GS  C  ++C   +    +YG N C  C   Y+ D
Sbjct: 144 YDRGSVQCSVKSCLLANRRPCEYGQNFCGPCLNGYSQD 181


>SB_16521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 47  GSRKYLVFTPT*IRAGFPFMPSLLKQTWSH 136
           G R+YL+++P        F P   +  W H
Sbjct: 81  GKRQYLLYSPNPQMGQLAFRPDKRQNVWQH 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,489,922
Number of Sequences: 59808
Number of extensions: 167032
Number of successful extensions: 375
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 16,821,457
effective HSP length: 62
effective length of database: 13,113,361
effective search space used: 301607303
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)