Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K16
(257 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) 96 3e-21
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo... 96 3e-21
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo... 96 3e-21
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 28 0.98
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl... 27 1.3
At1g29370.1 68414.m03591 kinase-related similar to putative prot... 26 3.0
At1g29350.1 68414.m03588 expressed protein 26 3.0
At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family... 26 4.0
At5g51800.1 68418.m06423 expressed protein 25 5.2
At1g67025.1 68414.m07621 hypothetical protein 25 5.2
At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein c... 25 6.9
At1g02720.2 68414.m00224 glycosyl transferase family 8 protein l... 25 6.9
At1g02720.1 68414.m00223 glycosyl transferase family 8 protein l... 25 6.9
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi... 25 9.1
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ... 25 9.1
At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma su... 25 9.1
At1g73610.1 68414.m08522 GDSL-motif lipase/hydrolase family prot... 25 9.1
>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
Length = 56
Score = 95.9 bits (228), Expect = 3e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 45 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 95.9 bits (228), Expect = 3e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 45 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 95.9 bits (228), Expect = 3e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 45 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 27.9 bits (59), Expect = 0.98
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +1
Query: 31 TNFTSWVTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISAGSASE 177
TN I GI VDTGRV V ++T M S+ + IS SAS+
Sbjct: 679 TNVAETSLTIPGIKYVVDTGRVKVKNYDSKTGMESY-EVDWISQASASQ 726
>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
SAM:salicylic acid carboxyl methyltransferase (SAMT)
[GI:6002712][Clarkia breweri] and to SAM:benzoic acid
carboxyl methyltransferase
(BAMT)[GI:9789277][Antirrhinum majus]
Length = 385
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 69 SHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDI 194
SH + GQ SC L+ +G +I F +YAH +
Sbjct: 323 SHKAKAGQKEASCIRAVTETMLVAHFGDDIIDALFHKYAHHV 364
>At1g29370.1 68414.m03591 kinase-related similar to putative protein
kinase (GI:11125348) [Homo sapiens]; similar to Paired
box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
Length = 831
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 95 FPFMPSLLKQTWSHS*IWLEYLQAVLPR 178
+P+MPS +QT++ + + + L A+LP+
Sbjct: 618 YPYMPSAFQQTFAGNSAYHQQLAALLPQ 645
>At1g29350.1 68414.m03588 expressed protein
Length = 831
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 95 FPFMPSLLKQTWSHS*IWLEYLQAVLPR 178
+P+MPS +QT++ + + + L A+LP+
Sbjct: 618 YPYMPSAFQQTFAGNSAYHQQLAALLPQ 645
>At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 437
Score = 25.8 bits (54), Expect = 4.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 160 QIFKPYLRMRPCLFEQARHEREPCPYL 80
++ +P +RP + Q HE+E P++
Sbjct: 191 ELVQPLASVRPWMVTQGNHEKESIPFI 217
>At5g51800.1 68418.m06423 expressed protein
Length = 972
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 172 KHCLQIFKPYLRMRPCLFEQARHEREPCP 86
+HCL + P LFE AR+ +EP P
Sbjct: 505 EHCLSKLRVPAGNLPSLFELARYLQEPPP 533
>At1g67025.1 68414.m07621 hypothetical protein
Length = 221
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 99 RSCRACSNRHGLIRKYGLNICRQC 170
+SCR CSN HG+ ++ QC
Sbjct: 182 QSCRGCSNSHGVCGSEPVSGSFQC 205
>At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 163
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +3
Query: 108 RACSNRHGLIRKYGL-NICRQCFREYAH 188
R C+N G N+C +CFR+ H
Sbjct: 11 RLCANNCGFFGSTATQNLCSKCFRDLQH 38
>At1g02720.2 68414.m00224 glycosyl transferase family 8 protein low
similarity to putative glycosyl transferase from
Neisseria gonorrhoeae [GI:595812]; contains Pfam
glycosyl transferase family 8 domain PF01501
Length = 361
Score = 25.0 bits (52), Expect = 6.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 187 MILDLKSWTKLRFNK 231
M++DLK W + RF K
Sbjct: 250 MVIDLKKWRQFRFTK 264
>At1g02720.1 68414.m00223 glycosyl transferase family 8 protein low
similarity to putative glycosyl transferase from
Neisseria gonorrhoeae [GI:595812]; contains Pfam
glycosyl transferase family 8 domain PF01501
Length = 361
Score = 25.0 bits (52), Expect = 6.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 187 MILDLKSWTKLRFNK 231
M++DLK W + RF K
Sbjct: 250 MVIDLKKWRQFRFTK 264
>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 588
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 133 RPCLFEQARHEREPC 89
RPC F A E++PC
Sbjct: 22 RPCCFSCAMEEKDPC 36
>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2)
(RP140) identical to SP|P38420 DNA-directed RNA
polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase II subunit 2) {Arabidopsis thaliana}
Length = 1188
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 90 QGSRSCRACSNRHGLIRKYGLNICRQCFRE 179
+ S CR C N+ +++ Y C+ F+E
Sbjct: 1137 KNSFECRGCKNKTDIVQVYIPYACKLLFQE 1166
>At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma
subunit family protein contains Pfam profile PF04189:
Eukaryotic initiation factor 3, gamma subunit
Length = 446
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 132 LIRKYGLNICRQCFREYAHDIGFKKLD 212
L R + +IC F++Y IGF ++D
Sbjct: 171 LRRPFARSICEAYFKKYPARIGFLRVD 197
>At1g73610.1 68414.m08522 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL6 (GI:15054390), EXL4
(GI:15054388) [Arabidopsis thaliana]; contains Pfam
profile PF00657: Lipase/Acylhydrolase with GDSL-like
motif
Length = 344
Score = 24.6 bits (51), Expect = 9.1
Identities = 7/19 (36%), Positives = 16/19 (84%)
Frame = +1
Query: 13 WVSRKQTNFTSWVTQISGI 69
WVS + T+F +++T+++G+
Sbjct: 134 WVSDQVTDFQNYITRLNGV 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,945,996
Number of Sequences: 28952
Number of extensions: 112726
Number of successful extensions: 263
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 64
effective length of database: 10,217,632
effective search space used: 214570272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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