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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K16
         (257 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)            96   3e-21
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo...    96   3e-21
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo...    96   3e-21
At1g33390.1 68414.m04133 helicase domain-containing protein simi...    28   0.98 
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl...    27   1.3  
At1g29370.1 68414.m03591 kinase-related similar to putative prot...    26   3.0  
At1g29350.1 68414.m03588 expressed protein                             26   3.0  
At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family...    26   4.0  
At5g51800.1 68418.m06423 expressed protein                             25   5.2  
At1g67025.1 68414.m07621 hypothetical protein                          25   5.2  
At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein c...    25   6.9  
At1g02720.2 68414.m00224 glycosyl transferase family 8 protein l...    25   6.9  
At1g02720.1 68414.m00223 glycosyl transferase family 8 protein l...    25   6.9  
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    25   9.1  
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ...    25   9.1  
At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma su...    25   9.1  
At1g73610.1 68414.m08522 GDSL-motif lipase/hydrolase family prot...    25   9.1  

>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
          Length = 56

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +3

Query: 45  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
           MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 1   MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54


>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +3

Query: 45  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
           MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 1   MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54


>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +3

Query: 45  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
           MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 1   MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54


>At1g33390.1 68414.m04133 helicase domain-containing protein similar
           to kurz protein [Drosophila melanogaster] GI:5869803;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1237

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 31  TNFTSWVTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISAGSASE 177
           TN       I GI   VDTGRV V    ++T M S+  +  IS  SAS+
Sbjct: 679 TNVAETSLTIPGIKYVVDTGRVKVKNYDSKTGMESY-EVDWISQASASQ 726


>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 385

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 69  SHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDI 194
           SH  + GQ   SC        L+  +G +I    F +YAH +
Sbjct: 323 SHKAKAGQKEASCIRAVTETMLVAHFGDDIIDALFHKYAHHV 364


>At1g29370.1 68414.m03591 kinase-related similar to putative protein
           kinase (GI:11125348) [Homo sapiens]; similar to Paired
           box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
          Length = 831

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 95  FPFMPSLLKQTWSHS*IWLEYLQAVLPR 178
           +P+MPS  +QT++ +  + + L A+LP+
Sbjct: 618 YPYMPSAFQQTFAGNSAYHQQLAALLPQ 645


>At1g29350.1 68414.m03588 expressed protein
          Length = 831

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 95  FPFMPSLLKQTWSHS*IWLEYLQAVLPR 178
           +P+MPS  +QT++ +  + + L A+LP+
Sbjct: 618 YPYMPSAFQQTFAGNSAYHQQLAALLPQ 645


>At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 437

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 160 QIFKPYLRMRPCLFEQARHEREPCPYL 80
           ++ +P   +RP +  Q  HE+E  P++
Sbjct: 191 ELVQPLASVRPWMVTQGNHEKESIPFI 217


>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 172 KHCLQIFKPYLRMRPCLFEQARHEREPCP 86
           +HCL   +      P LFE AR+ +EP P
Sbjct: 505 EHCLSKLRVPAGNLPSLFELARYLQEPPP 533


>At1g67025.1 68414.m07621 hypothetical protein
          Length = 221

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 99  RSCRACSNRHGLIRKYGLNICRQC 170
           +SCR CSN HG+     ++   QC
Sbjct: 182 QSCRGCSNSHGVCGSEPVSGSFQC 205


>At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 163

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +3

Query: 108 RACSNRHGLIRKYGL-NICRQCFREYAH 188
           R C+N  G        N+C +CFR+  H
Sbjct: 11  RLCANNCGFFGSTATQNLCSKCFRDLQH 38


>At1g02720.2 68414.m00224 glycosyl transferase family 8 protein low
           similarity to putative glycosyl transferase from
           Neisseria gonorrhoeae [GI:595812]; contains Pfam
           glycosyl transferase family 8 domain PF01501
          Length = 361

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 187 MILDLKSWTKLRFNK 231
           M++DLK W + RF K
Sbjct: 250 MVIDLKKWRQFRFTK 264


>At1g02720.1 68414.m00223 glycosyl transferase family 8 protein low
           similarity to putative glycosyl transferase from
           Neisseria gonorrhoeae [GI:595812]; contains Pfam
           glycosyl transferase family 8 domain PF01501
          Length = 361

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 187 MILDLKSWTKLRFNK 231
           M++DLK W + RF K
Sbjct: 250 MVIDLKKWRQFRFTK 264


>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 133 RPCLFEQARHEREPC 89
           RPC F  A  E++PC
Sbjct: 22  RPCCFSCAMEEKDPC 36


>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
            polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2)
            (RP140) identical to SP|P38420 DNA-directed RNA
            polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
            polymerase II subunit 2) {Arabidopsis thaliana}
          Length = 1188

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 90   QGSRSCRACSNRHGLIRKYGLNICRQCFRE 179
            + S  CR C N+  +++ Y    C+  F+E
Sbjct: 1137 KNSFECRGCKNKTDIVQVYIPYACKLLFQE 1166


>At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma
           subunit family protein contains Pfam profile PF04189:
           Eukaryotic initiation factor 3, gamma subunit
          Length = 446

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 132 LIRKYGLNICRQCFREYAHDIGFKKLD 212
           L R +  +IC   F++Y   IGF ++D
Sbjct: 171 LRRPFARSICEAYFKKYPARIGFLRVD 197


>At1g73610.1 68414.m08522 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL6 (GI:15054390), EXL4
           (GI:15054388) [Arabidopsis thaliana]; contains Pfam
           profile PF00657: Lipase/Acylhydrolase with GDSL-like
           motif
          Length = 344

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +1

Query: 13  WVSRKQTNFTSWVTQISGI 69
           WVS + T+F +++T+++G+
Sbjct: 134 WVSDQVTDFQNYITRLNGV 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,945,996
Number of Sequences: 28952
Number of extensions: 112726
Number of successful extensions: 263
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 64
effective length of database: 10,217,632
effective search space used: 214570272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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