BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_K16 (257 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) 96 3e-21 At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo... 96 3e-21 At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo... 96 3e-21 At1g33390.1 68414.m04133 helicase domain-containing protein simi... 28 0.98 At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl... 27 1.3 At1g29370.1 68414.m03591 kinase-related similar to putative prot... 26 3.0 At1g29350.1 68414.m03588 expressed protein 26 3.0 At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family... 26 4.0 At5g51800.1 68418.m06423 expressed protein 25 5.2 At1g67025.1 68414.m07621 hypothetical protein 25 5.2 At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein c... 25 6.9 At1g02720.2 68414.m00224 glycosyl transferase family 8 protein l... 25 6.9 At1g02720.1 68414.m00223 glycosyl transferase family 8 protein l... 25 6.9 At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi... 25 9.1 At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ... 25 9.1 At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma su... 25 9.1 At1g73610.1 68414.m08522 GDSL-motif lipase/hydrolase family prot... 25 9.1 >At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) Length = 56 Score = 95.9 bits (228), Expect = 3e-21 Identities = 38/54 (70%), Positives = 43/54 (79%) Frame = +3 Query: 45 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206 MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54 >At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribosomal protein S29, rat, PIR:S30298 Length = 56 Score = 95.9 bits (228), Expect = 3e-21 Identities = 38/54 (70%), Positives = 43/54 (79%) Frame = +3 Query: 45 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206 MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54 >At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribosomal protein S29, rat, PIR:S30298 Length = 56 Score = 95.9 bits (228), Expect = 3e-21 Identities = 38/54 (70%), Positives = 43/54 (79%) Frame = +3 Query: 45 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206 MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54 >At1g33390.1 68414.m04133 helicase domain-containing protein similar to kurz protein [Drosophila melanogaster] GI:5869803; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain Length = 1237 Score = 27.9 bits (59), Expect = 0.98 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = +1 Query: 31 TNFTSWVTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISAGSASE 177 TN I GI VDTGRV V ++T M S+ + IS SAS+ Sbjct: 679 TNVAETSLTIPGIKYVVDTGRVKVKNYDSKTGMESY-EVDWISQASASQ 726 >At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) [GI:6002712][Clarkia breweri] and to SAM:benzoic acid carboxyl methyltransferase (BAMT)[GI:9789277][Antirrhinum majus] Length = 385 Score = 27.5 bits (58), Expect = 1.3 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +3 Query: 69 SHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDI 194 SH + GQ SC L+ +G +I F +YAH + Sbjct: 323 SHKAKAGQKEASCIRAVTETMLVAHFGDDIIDALFHKYAHHV 364 >At1g29370.1 68414.m03591 kinase-related similar to putative protein kinase (GI:11125348) [Homo sapiens]; similar to Paired box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris] Length = 831 Score = 26.2 bits (55), Expect = 3.0 Identities = 10/28 (35%), Positives = 20/28 (71%) Frame = +2 Query: 95 FPFMPSLLKQTWSHS*IWLEYLQAVLPR 178 +P+MPS +QT++ + + + L A+LP+ Sbjct: 618 YPYMPSAFQQTFAGNSAYHQQLAALLPQ 645 >At1g29350.1 68414.m03588 expressed protein Length = 831 Score = 26.2 bits (55), Expect = 3.0 Identities = 10/28 (35%), Positives = 20/28 (71%) Frame = +2 Query: 95 FPFMPSLLKQTWSHS*IWLEYLQAVLPR 178 +P+MPS +QT++ + + + L A+LP+ Sbjct: 618 YPYMPSAFQQTFAGNSAYHQQLAALLPQ 645 >At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase Length = 437 Score = 25.8 bits (54), Expect = 4.0 Identities = 8/27 (29%), Positives = 16/27 (59%) Frame = -2 Query: 160 QIFKPYLRMRPCLFEQARHEREPCPYL 80 ++ +P +RP + Q HE+E P++ Sbjct: 191 ELVQPLASVRPWMVTQGNHEKESIPFI 217 >At5g51800.1 68418.m06423 expressed protein Length = 972 Score = 25.4 bits (53), Expect = 5.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 172 KHCLQIFKPYLRMRPCLFEQARHEREPCP 86 +HCL + P LFE AR+ +EP P Sbjct: 505 EHCLSKLRVPAGNLPSLFELARYLQEPPP 533 >At1g67025.1 68414.m07621 hypothetical protein Length = 221 Score = 25.4 bits (53), Expect = 5.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 99 RSCRACSNRHGLIRKYGLNICRQC 170 +SCR CSN HG+ ++ QC Sbjct: 182 QSCRGCSNSHGVCGSEPVSGSFQC 205 >At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger Length = 163 Score = 25.0 bits (52), Expect = 6.9 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Frame = +3 Query: 108 RACSNRHGLIRKYGL-NICRQCFREYAH 188 R C+N G N+C +CFR+ H Sbjct: 11 RLCANNCGFFGSTATQNLCSKCFRDLQH 38 >At1g02720.2 68414.m00224 glycosyl transferase family 8 protein low similarity to putative glycosyl transferase from Neisseria gonorrhoeae [GI:595812]; contains Pfam glycosyl transferase family 8 domain PF01501 Length = 361 Score = 25.0 bits (52), Expect = 6.9 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +1 Query: 187 MILDLKSWTKLRFNK 231 M++DLK W + RF K Sbjct: 250 MVIDLKKWRQFRFTK 264 >At1g02720.1 68414.m00223 glycosyl transferase family 8 protein low similarity to putative glycosyl transferase from Neisseria gonorrhoeae [GI:595812]; contains Pfam glycosyl transferase family 8 domain PF01501 Length = 361 Score = 25.0 bits (52), Expect = 6.9 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +1 Query: 187 MILDLKSWTKLRFNK 231 M++DLK W + RF K Sbjct: 250 MVIDLKKWRQFRFTK 264 >At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain Length = 588 Score = 24.6 bits (51), Expect = 9.1 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = -2 Query: 133 RPCLFEQARHEREPC 89 RPC F A E++PC Sbjct: 22 RPCCFSCAMEEKDPC 36 >At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2) (RP140) identical to SP|P38420 DNA-directed RNA polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 2) {Arabidopsis thaliana} Length = 1188 Score = 24.6 bits (51), Expect = 9.1 Identities = 9/30 (30%), Positives = 16/30 (53%) Frame = +3 Query: 90 QGSRSCRACSNRHGLIRKYGLNICRQCFRE 179 + S CR C N+ +++ Y C+ F+E Sbjct: 1137 KNSFECRGCKNKTDIVQVYIPYACKLLFQE 1166 >At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma subunit family protein contains Pfam profile PF04189: Eukaryotic initiation factor 3, gamma subunit Length = 446 Score = 24.6 bits (51), Expect = 9.1 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 132 LIRKYGLNICRQCFREYAHDIGFKKLD 212 L R + +IC F++Y IGF ++D Sbjct: 171 LRRPFARSICEAYFKKYPARIGFLRVD 197 >At1g73610.1 68414.m08522 GDSL-motif lipase/hydrolase family protein similar to family II lipase EXL6 (GI:15054390), EXL4 (GI:15054388) [Arabidopsis thaliana]; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif Length = 344 Score = 24.6 bits (51), Expect = 9.1 Identities = 7/19 (36%), Positives = 16/19 (84%) Frame = +1 Query: 13 WVSRKQTNFTSWVTQISGI 69 WVS + T+F +++T+++G+ Sbjct: 134 WVSDQVTDFQNYITRLNGV 152 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,945,996 Number of Sequences: 28952 Number of extensions: 112726 Number of successful extensions: 263 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 261 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 263 length of database: 12,070,560 effective HSP length: 64 effective length of database: 10,217,632 effective search space used: 214570272 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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