Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K14
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    27   2.2  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    26   2.9  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   5.0  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   8.8  

>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -2

Query: 205 QSPTKETLISVYFFKPCATKFMLSYK*TTPIDILIFYTSIVTAILFIHLSKSELKCN*PL 26
           +SP+ + L   YFF+  A+K+ ++   +  +   I Y+    A + ++ +KSE   +   
Sbjct: 117 ESPSNDALTESYFFRQPASKYSITQD-SPRVSSTIAYSFKPKASIALNTTKSEATRSSLS 175

Query: 25  LILYDSY 5
              +DSY
Sbjct: 176 SSSFDSY 182


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 57  DKWIKSIAVTIDV*KIKISIGVVYLYDNMNLVAQGLKK*TDINVSFVGDC 206
           + WIK++ VT+      I + VV+L   + + +  L K   +   F+  C
Sbjct: 159 ETWIKAVKVTVIFLAQCIKVTVVFLAQCVKVTSISLAKCVKLTAVFLAQC 208


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 39  HFNSLLDKWIKSIAVTIDV*KIKISIGVVYLYDNMNLVAQGLK 167
           H + ++ K +++  + +     +I  GV+YL+D M+LV + LK
Sbjct: 454 HIHGVMSKGLRNCYILLFA---RILEGVLYLHDAMHLVHRDLK 493


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 380 RGNIYSLRQLATENLYDLLKXXXXFRNILFNYI 282
           R  + S++QL T+N+ DL+K      N   +++
Sbjct: 279 RDGLESVKQLGTQNVLDLIKLVEWNHNFGIHFM 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,291
Number of Sequences: 5004
Number of extensions: 37648
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)