Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K14
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0325 - 17731567-17731606,17731776-17731951                       28   5.1  
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363...    27   8.8  
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171...    27   8.8  
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    27   8.8  

>02_03_0325 - 17731567-17731606,17731776-17731951
          Length = 71

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 178 ILMFLLLAIVHSRLWLYTTRI 240
           +L F+LL I+HS++WL  +R+
Sbjct: 17  VLPFMLLRILHSQVWLTISRL 37


>05_01_0458 +
           3630218-3630274,3630383-3630507,3630635-3630710,
           3630884-3630985,3631075-3631290,3632217-3632297,
           3633152-3633235,3633405-3633509,3634338-3634516,
           3634681-3634765,3634889-3635090,3635165-3635234,
           3635353-3635422,3635745-3635834,3636020-3636088,
           3636520-3636618,3636804-3636914
          Length = 606

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -1

Query: 335 YDLLKXXXXFRNILFNYITGRHSQ*R*KLTTYIRVVYNHRRLCTIANKRNINI 177
           Y  +K      N L NY          K  T + + Y H R+C+I  K N ++
Sbjct: 457 YGAVKYADLKNNRLTNYTFSFEQMLSDKGNTAVYLQYAHARICSIIRKSNKDV 509


>04_01_0148 +
           1710369-1710531,1711821-1712279,1712769-1712915,
           1713004-1714170,1714378-1714430
          Length = 662

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 177 QFIFLNLVLLSSCCHINKLPL*IF*SFIHQSSL 79
           Q +  N+V L  CC ++K+PL ++  FI   +L
Sbjct: 382 QIVHRNVVKLFGCCLVSKVPLLVY-EFISNGTL 413


>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 132 YDNMNLVAQGLKK*TDINVSFVGDCT*PPMVIYDSYISRQFLTSL 266
           Y  +N +   LK  + I+VSFV +C  P   +    +S++FLT L
Sbjct: 821 YRQLNCLGSKLK--SCIHVSFVSECGLPEAGLDYGGLSKEFLTDL 863


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,831,202
Number of Sequences: 37544
Number of extensions: 183730
Number of successful extensions: 300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)