Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K14
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  28   5.2  
SB_2622| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_14536| Best HMM Match : Pox_A32 (HMM E-Value=0.54)                  27   9.1  

>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 413 FSGGRNLYDRLRGNIYSLRQLATENLYDLLKXXXXFRNILFNYITGRHSQ 264
           F  G + YD+L   +   + L TE+L+D ++      +  FN I GRHS+
Sbjct: 507 FFHGHDNYDQL---VRIAKVLGTEDLFDYIEKYHIELDPRFNDILGRHSK 553


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 419 CSFSGGRNLYDRLRGNIYSLRQLAT-ENLYDLLKXXXXFRNILFNYITGRHSQ*R*KLTT 243
           CSFS G +L+  + GN+  L    T EN+ +L       R ++++    +          
Sbjct: 239 CSFSNGGHLFAAVHGNVIQLYSSTTFENVGNLKGHNGKVRQVIWSQDDSKIISCGMDGAV 298

Query: 242 YIRVVYNHRR 213
           Y   VYN++R
Sbjct: 299 YEWNVYNYKR 308


>SB_2622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 505 LLISKCNGAFDFRRNIHIDNVLSSYVYIYVV 413
           LL + C+G      ++ + NVLS++ +I++V
Sbjct: 4   LLATDCHGIVHIEVSVEVSNVLSAFGFIFLV 34


>SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 91  SIVTAILFIHLSKSELKCN 35
           SI T+I+F+H+SK+  +CN
Sbjct: 61  SINTSIVFLHISKATSQCN 79


>SB_14536| Best HMM Match : Pox_A32 (HMM E-Value=0.54)
          Length = 470

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 12  SYRIKSG*LHFNSLLDKWIKSIAVTID 92
           SY IK+  L + SL D  +KS+ VTID
Sbjct: 37  SYGIKNLELEYESLRDDNLKSVRVTID 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,124
Number of Sequences: 59808
Number of extensions: 247883
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)