Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K14
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50313-2|AAY86230.1|  883|Caenorhabditis elegans Inositol 1,4,5-...    27   7.9  
U50313-1|AAY86229.1|  923|Caenorhabditis elegans Inositol 1,4,5-...    27   7.9  
J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...    27   7.9  
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...    27   7.9  

>U50313-2|AAY86230.1|  883|Caenorhabditis elegans Inositol
           1,4,5-trisphosphate receptorinteracting protein protein
           1, isoform b protein.
          Length = 883

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +3

Query: 36  LHFNSLLDKWIKSIAVTIDV*KIKISIGVVYLYDNMNLVAQGLKK*TDINVS 191
           LH + L  +++ S +  +    ++ ++ +VYL+  +NL    LK+  D+  +
Sbjct: 481 LHMHRLFSEFV-STSAQLQYIDVEDNVNIVYLHSLLNLCKSALKEMVDVKAT 531


>U50313-1|AAY86229.1|  923|Caenorhabditis elegans Inositol
           1,4,5-trisphosphate receptorinteracting protein protein
           1, isoform a protein.
          Length = 923

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +3

Query: 36  LHFNSLLDKWIKSIAVTIDV*KIKISIGVVYLYDNMNLVAQGLKK*TDINVS 191
           LH + L  +++ S +  +    ++ ++ +VYL+  +NL    LK+  D+  +
Sbjct: 481 LHMHRLFSEFV-STSAQLQYIDVEDNVNIVYLHSLLNLCKSALKEMVDVKAT 531


>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 413 FSGGRNLYDRLRGNIYSLRQLATENLYDLLKXXXXFRNILFNYITGRHSQ*R 258
           F  G + YD+L   +   + L T+ LY+ +       +  FN I GRHS+ R
Sbjct: 231 FFHGHDNYDQL---VRIAKVLGTDELYEYIARYHIDLDPRFNDILGRHSRKR 279


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 413 FSGGRNLYDRLRGNIYSLRQLATENLYDLLKXXXXFRNILFNYITGRHSQ*R 258
           F  G + YD+L   +   + L T+ LY+ +       +  FN I GRHS+ R
Sbjct: 231 FFHGHDNYDQL---VRIAKVLGTDELYEYIARYHIDLDPRFNDILGRHSRKR 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,424,802
Number of Sequences: 27780
Number of extensions: 199937
Number of successful extensions: 401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)