Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K14
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR ...    31   0.60 
At4g26300.1 68417.m03783 arginyl-tRNA synthetase, putative / arg...    27   9.8  

>At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 885

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = -2

Query: 346 PKIFTIY*NSFFFSEIYYLIILRDDTLNDVKN*RLIYESYITIGGYVQSPTKETLISVYF 167
           PK+ +IY     F  + YL+I R   L      RL + S  TIG  V++  +E +I +  
Sbjct: 790 PKLESIYWTPLPFPVLEYLVIRRCPELR-----RLPFNSESTIGNQVETIIEEQVIKIVE 844

Query: 166 FKPCATKFMLSY 131
           ++  ATK   S+
Sbjct: 845 WEDEATKQRFSH 856


>At4g26300.1 68417.m03783 arginyl-tRNA synthetase, putative /
           arginine--tRNA ligase, putative similar to SP|P37880
           Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA
           ligase) (ArgRS) {Cricetulus longicaudatus}; contains
           Pfam profiles PF00750: arginyl-tRNA synthetase, PF03485:
           arginyl-tRNA synthetase N-terminal domain
          Length = 642

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -1

Query: 362 LRQLATENLYDLLKXXXXFRNILFNYITGRHSQ*R*KLTTYIRVVYNHRRLCTIANKRNI 183
           L Q A    Y  +K      N L NY          K  T + ++Y H R+C+I  K   
Sbjct: 484 LDQTAEAVGYGAVKYADLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGK 543

Query: 182 NI 177
           +I
Sbjct: 544 DI 545


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,407,441
Number of Sequences: 28952
Number of extensions: 170602
Number of successful extensions: 346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)