Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K13
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    25   0.38 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.66 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.0  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   6.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.1  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = +3

Query: 195 IQPCICTREIKQVCGSDGVTYGNPCLLNCATQSNPSLSIEHPGPCDNRVKVVENQPESNK 374
           ++P  CT + +   GS G+  G+P     A       S+    PC   +    +QP   +
Sbjct: 139 VRPAACTPDSRVGYGSVGLVGGDPASSPGAAAGRTGNSLSWNNPCS--INSTSSQPVGTQ 196

Query: 375 V 377
           +
Sbjct: 197 I 197


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 327 CDNRVKVVENQPESNKVIVVDNNNAPSCACTRNLEPVC 440
           C+ +    +   E++  +  D N AP C  T+ + P C
Sbjct: 135 CNGKPDCKDESDENSCTVETDPNRAPDCDPTQCVLPDC 172


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 315 VRCSSSGSTVWRNSTGTG 262
           VRC  +GST  R +TG G
Sbjct: 918 VRCVCAGSTGTRRATGCG 935


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 279 CATQSNPSLSIEHPGPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRN 425
           C  + + SL ++H   C     +  NQ    K  ++ NN  P  + TR+
Sbjct: 640 CGNKIDTSLFVDHIRQCVGGGTIGSNQRNFLKNALMSNNILPPESPTRD 688


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -1

Query: 262 LP*VTPSLPQTCLISRVQIHGCISATLTSWHSPR 161
           +P   P  P         I   I   +T WHSPR
Sbjct: 42  IPATAPQKPDKWEDVMADIERVIMPGVTHWHSPR 75


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 96  TYPNKCSLECSRPLAPSLE 152
           T P K  ++  RPLAP+ E
Sbjct: 37  TQPTKTVIQSKRPLAPAPE 55


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 327 CDNRVKVVENQPESNKVIVVDNNNAPSCAC 416
           C NR+ + ++ P  N     D+    +C C
Sbjct: 58  CQNRINLCDSSPCLNGATCQDHTTHYTCHC 87



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/30 (30%), Positives = 10/30 (33%)
 Frame = +3

Query: 327 CDNRVKVVENQPESNKVIVVDNNNAPSCAC 416
           C   V      P  N+   V N N   C C
Sbjct: 96  CGEYVDWCSTNPCENQATCVQNKNQYQCLC 125


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 547 IWFFYALQGSCVTTVKWSPPWHRIMHS-LL*VTP 449
           IW  + L  + +T   W+P   R+  +  L VTP
Sbjct: 466 IWLLWLLSQTWITLHIWTPKCERLARTEKLFVTP 499


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 547 IWFFYALQGSCVTTVKWSPPWHRIMHS-LL*VTP 449
           IW  + L  + +T   W+P   R+  +  L VTP
Sbjct: 466 IWLLWLLSQTWITLHIWTPKCERLARTEKLFVTP 499


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 547 IWFFYALQGSCVTTVKWSPPWHRIMHS-LL*VTP 449
           IW  + L  + +T   W+P   R+  +  L VTP
Sbjct: 466 IWLLWLLSQTWITLHIWTPKCERLARTEKLFVTP 499


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 547 IWFFYALQGSCVTTVKWSPPWHRIMHS-LL*VTP 449
           IW  + L  + +T   W+P   R+  +  L VTP
Sbjct: 466 IWLLWLLSQTWITLHIWTPKCERLARTEKLFVTP 499


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 219 EIKQVCGSDGVTYGNPCLLNCATQSNPSLSI 311
           +I+     + V  GN   L C    NP+  I
Sbjct: 415 QIRHAFNEETVQPGNSVFLKCIASGNPTPEI 445


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +2

Query: 71  PGLWHRREHLP 103
           P +WH   H+P
Sbjct: 47  PQMWHHHSHMP 57


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +2

Query: 71  PGLWHRREHLP 103
           P +WH   H+P
Sbjct: 47  PQMWHHHSHMP 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,298
Number of Sequences: 336
Number of extensions: 3661
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)