Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K13
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    27   2.8  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.8  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   6.5  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 210 CTREIKQVCGSDGVTYGNPCLLNCA 284
           C R +  +  S+ V YG P  LNCA
Sbjct: 110 CERLLPYLVASNPVNYGRPWRLNCA 134


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = -1

Query: 250 TPSLPQTCLISRVQIHGCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPSVPQTG 71
           T S P T +    ++H    AT  + +S     S    N    +  ++L    PS+ Q  
Sbjct: 121 TYSTPYTTMNPSNEMHPYPPATFENNYSVLPDHSSQ-PNAYSFTGSNILPTQSPSLNQMQ 179

Query: 70  AYMKVQTQGSASSHVPSFT 14
            Y  +Q  GS+++ +PSF+
Sbjct: 180 DYQNLQQNGSSNTTIPSFS 198


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 547 IWFFYALQGSCVTTVKWSPPWHRIMHSLL*VTPFEAQTGSK 425
           +++  AL+G C   +++SPP    ++S L V  F      K
Sbjct: 185 LYYKLALEGKCNYVIRYSPPSSSKLNSKLYVKGFGTHVSLK 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,347
Number of Sequences: 5004
Number of extensions: 52935
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)