Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K13
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671...    30   1.2  
04_04_1269 + 32272290-32272321,32272924-32274143,32274390-322744...    29   2.9  
01_01_0363 + 2850954-2853675,2853819-2854225                           29   2.9  
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     28   6.7  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    28   6.7  
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888...    28   6.7  
10_01_0162 + 1820761-1821855                                           27   8.8  

>03_06_0727 -
           35766252-35766481,35766592-35766721,35767049-35767116,
           35767179-35767217,35767677-35767761,35768097-35768197,
           35768292-35768511
          Length = 290

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
 Frame = +3

Query: 36  EADPCVCTFIYAPVCGTDGNTYPNKCSLECS-RPLAPSL-------EMKHRGECQEVKVA 191
           + D  V   +Y P  GT     P K S+E   +P+   +       EM  +   Q + + 
Sbjct: 35  QGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLL 94

Query: 192 DIQPCICTREIKQVCGSDG-VTYGNPCLLNCATQSNPSLSIEH 317
            + P   T  I QV G+DG V++    LL+    S   L  EH
Sbjct: 95  TVHPNTTTSVILQVVGNDGSVSFCRNVLLSIV--SGCLLDYEH 135


>04_04_1269 +
           32272290-32272321,32272924-32274143,32274390-32274433,
           32274883-32275093,32275176-32275413,32275498-32275585,
           32275865-32276020,32276370-32276444
          Length = 687

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 402 PSCACTRNLEPVCASNGVTYNNECMMRCHGGDHLTVVT 515
           PSC C    EPV +++      +  +RC G DH  +++
Sbjct: 302 PSCQCLDGFEPVGSNSSSGCRRKQQLRC-GDDHFVIMS 338


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 202 GCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPS 86
           G  S TLTSW+S   F + +G     H    ++G   PS
Sbjct: 31  GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69


>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -3

Query: 365 FRLVFHNLHSVVARTRVFDAQARVRLCGAIQQARVAVSDAVATANLFDLPRADTWLYIGN 186
           F ++ H +H +V       A    R   A+Q +RVAV  AV     F     +   ++G+
Sbjct: 306 FPVMMHPIHEIVEARLFPSAGGWARKRAAVQASRVAVVGAVTAVACFVPAFGEFAAFVGS 365

Query: 185 --FNFLAFA--AMFHL 150
                L+F   A+FHL
Sbjct: 366 TVCALLSFVLPALFHL 381


>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 408  CACTRNL-EPVCASNGVTYNNECMMRC 485
            C C + L  P+C   G T+  EC++ C
Sbjct: 1186 CLCLKPLIHPLCCPKGHTFCKECILEC 1212


>03_02_0495 -
           8879612-8880283,8880369-8880608,8880713-8880775,
           8881510-8881620
          Length = 361

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 220 SRVQIHGCISATLTSWHS 167
           +RV+ H CIS+++  WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313


>10_01_0162 + 1820761-1821855
          Length = 364

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 1/115 (0%)
 Frame = +3

Query: 129 RPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGVTYGNPCL-LNCATQSNPSL 305
           R  AP L  +HR +      A +   +C    + V     V + NP L         P+ 
Sbjct: 69  RYTAPQLLHRHRQDAAAAAAATVALRVCAHGRRHVVFYVCVRFANPWLDTYWICLDAPAA 128

Query: 306 SIEHPGPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRNLEPVCASNGVTYNNE 470
           +    G  D+  + +  +    ++  + +  A    C R L  +CA NGV    E
Sbjct: 129 AALLAGGLDDTARALARRERGARLAALWSALADR-LCRRVLVDLCAKNGVPVEPE 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,176,988
Number of Sequences: 37544
Number of extensions: 387056
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)