Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K12
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   2.1  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   2.8  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   3.7  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    24   4.8  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    24   6.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    24   6.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   6.4  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    23   8.5  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    23   8.5  

>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 18  ITREAANRHPEHTKGEPEPGEGSRRQHGSDLTETGAKTESGIR 146
           ++RE  NR    T+       G +  HGS LT+TG   +  ++
Sbjct: 24  LSREGTNRSSNVTRTV----SGRKSNHGSSLTDTGESDQLSLK 62


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 1   EKQATALHEKLQTAIQNTLKE--SQ-NLAKEVGVNMDQTSQKLAPKLKAAYD 147
           EKQ    HEK+   ++  LKE  SQ N AK++ ++    +Q +  K+   ++
Sbjct: 234 EKQRNTEHEKIIRRMKKELKELHSQFNFAKKLFISALSANQDILDKMNDEFN 285


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 28  KLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAP 126
           K Q ++ +T   +    K  GVN DQT Q  AP
Sbjct: 275 KSQASVSSTASTTGQTVK--GVNADQTQQPTAP 305


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 16/72 (22%), Positives = 36/72 (50%)
 Frame = +1

Query: 1   EKQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQK 180
           EKQ  +++E+L+   +      +   +E     ++ +++ A   +  + +  K  +EVQ+
Sbjct: 665 EKQNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAEHDREIFYEREKQRKEVQE 724

Query: 181 KVHEAATKQ*RA 216
           + HE A K  +A
Sbjct: 725 RKHEQAIKDKKA 736


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 70  NLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEE 171
           +L K +  +MD+ SQKLA  + +      +H +E
Sbjct: 268 SLQKLIDASMDKNSQKLARLIFSLLYQITQHEQE 301


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 18  ITREAANRHPEHTKGEPEPGEGSRRQHGSDLTETG 122
           I+ E+ ++  + T G+P      R++HG+  T  G
Sbjct: 315 ISWESHSQDGDRTTGQPRHANNGRKKHGNFWTIQG 349


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 58   KESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEV 174
            K++    K+ G+N +QTS +  P  ++   D + + ++V
Sbjct: 1583 KKTGKARKDKGINNNQTSPQNKPSKESLKSDTISNEKKV 1621


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 142 YDDFVKHAEEVQKKVHE 192
           YDDF    EEV+++V E
Sbjct: 187 YDDFEDEEEEVEEQVEE 203


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 19  LHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHE 192
           +H+ L   I N + + Q+   +   ++ Q      PKL A Y  +    E + KKV +
Sbjct: 132 MHKSLNDEI-NYILDDQDACLKPKPSVAQLFLSWLPKLSAVYGRYCVIQENIGKKVEK 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,013,699
Number of Sequences: 5004
Number of extensions: 13198
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)