Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K12
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339... 30 0.45
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339... 29 0.60
01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369... 29 1.0
03_05_0437 - 24293236-24294120 28 1.4
12_02_1067 - 25792295-25793167 27 2.4
11_06_0374 + 22877325-22878500,22879898-22880014,22880131-228803... 27 2.4
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306... 27 2.4
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 27 4.2
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 26 5.6
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464... 26 5.6
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153... 26 5.6
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 26 5.6
05_05_0091 + 22319411-22320901 25 9.7
>01_06_1692 -
39232475-39232867,39233176-39233310,39233770-39233916,
39234131-39234303,39235201-39235288,39235508-39235725,
39235968-39236025,39236259-39236315,39237022-39237099
Length = 448
Score = 29.9 bits (64), Expect = 0.45
Identities = 15/61 (24%), Positives = 33/61 (54%)
Frame = +1
Query: 40 AIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEAATKQ*RAL 219
A+++ L E++++AKE+ N+ + + APK + DF+ E ++ ++ A+
Sbjct: 386 ALKSYLNENESIAKELETNLRKLMETQAPKKQEDEGDFLSDLPEESLATETSSEEELAAV 445
Query: 220 I 222
I
Sbjct: 446 I 446
>12_02_1015 +
25331667-25332169,25333305-25333406,25333775-25333919,
25334002-25334186,25334297-25334401,25334507-25334604,
25334686-25334924,25335030-25335123,25335190-25335275,
25335579-25335677,25335804-25335869
Length = 573
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 91 RRLPSPG-SGSPLVCSGWRFAASRVMR 14
RRLP G + S VC GWR A RV R
Sbjct: 108 RRLPPRGVAASAAVCRGWRGCARRVWR 134
>01_01_0505 -
3695937-3695972,3696251-3696316,3696658-3696747,
3696934-3697143,3697371-3697404,3697566-3697912
Length = 260
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 98 MLTPTSFARFWLSFSVFWMAVCSFSCNAVACF 3
M T+ + +WL++ AV +SC +ACF
Sbjct: 1 MAVDTTASEYWLNWRFMLCAVWVYSCMVLACF 32
>03_05_0437 - 24293236-24294120
Length = 294
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 70 SGSPLVCSGWRFAASRVMRW 11
S +PLVC GWR AA+ W
Sbjct: 36 SAAPLVCRGWRRAAADPSLW 55
>12_02_1067 - 25792295-25793167
Length = 290
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 91 RRLP--SPGSGSPLVCSGWRFAASRVMRW 11
RRLP + +PLVC WR AA W
Sbjct: 28 RRLPLDDVAAAAPLVCRSWRAAARDASLW 56
>11_06_0374 +
22877325-22878500,22879898-22880014,22880131-22880322,
22880742-22880783
Length = 508
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 27 EAANRHPEHTKGEPEPGEGSRRQHGSDL 110
E H E EP PG RR+HG ++
Sbjct: 318 EVRREHGEEVHVEPAPGGEVRREHGEEV 345
>05_05_0352 +
24328117-24328303,24328451-24328559,24330634-24330692,
24331139-24331220,24331361-24331481,24331751-24332278,
24332724-24332831,24332934-24333131,24334043-24334234,
24336116-24336199,24336385-24336525,24336683-24336748,
24336880-24337047,24337134-24337463,24337568-24337666
Length = 823
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 136 AAYDDFVKHAEEVQKKVHEAATKQ*RALIARR 231
A Y D K+ EE+Q + E +Q AL+ +R
Sbjct: 175 ALYPDIDKYEEEIQASIAETFRRQSEALVKKR 206
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 48 EHTKGEPEPGEGSRRQHGSDLTETGAKTESGI 143
E+ E GEGS GSD +E G + + +
Sbjct: 244 EYADESDEDGEGSSSDEGSDFSEDGDQEDESV 275
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 26.2 bits (55), Expect = 5.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +1
Query: 256 SCIIICNKHFCV 291
+C+I+CNKHF +
Sbjct: 480 NCVILCNKHFSI 491
>07_03_0262 +
15944259-15944514,15945524-15945597,15946320-15946400,
15946621-15946713,15946946-15947014,15947578-15947697,
15948342-15948413,15948624-15948701,15949463-15949654
Length = 344
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 75 GEGSRRQHGSDLTETGAKTESG 140
G GS +HG+ TG K+ SG
Sbjct: 20 GSGSEAEHGNPREHTGGKSNSG 41
>05_05_0170 +
22913791-22914315,22914418-22914581,22914675-22915325,
22915425-22915542,22915635-22915823,22915948-22916118
Length = 605
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 22 HEKLQTAIQNTLKESQNLAKEVGVNM 99
HE++ TAI L+ES+ + VG N+
Sbjct: 185 HEQIDTAIATALRESKPVYISVGCNL 210
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 60 GEPEPGEGSRRQHGS 104
G PEP G RRQ GS
Sbjct: 139 GSPEPARGPRRQRGS 153
>05_05_0091 + 22319411-22320901
Length = 496
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 55 VCSGWRFAASRVMRWL 8
+ GWR AA R++ WL
Sbjct: 405 LAEGWRSAAGRILAWL 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,076,097
Number of Sequences: 37544
Number of extensions: 105138
Number of successful extensions: 415
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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