BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_K12 (318 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16) 32 0.12 SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 29 0.62 SB_56150| Best HMM Match : Psf2 (HMM E-Value=1.7) 29 0.62 SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 28 1.4 SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7) 28 1.4 SB_7096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9 SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037) 27 3.3 SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3 SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3 SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15) 27 4.4 SB_39885| Best HMM Match : KIP1 (HMM E-Value=1.2) 27 4.4 SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4 SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4 SB_27968| Best HMM Match : Calx-beta (HMM E-Value=0.0037) 26 5.8 SB_13630| Best HMM Match : RVP (HMM E-Value=0.27) 26 5.8 SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20) 26 5.8 SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 26 5.8 SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4) 26 7.6 SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.6 SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7) 26 7.6 SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8) 26 7.6 SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20) 26 7.6 SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0) 26 7.6 SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 26 7.6 >SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16) Length = 375 Score = 31.9 bits (69), Expect = 0.12 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = +1 Query: 19 LHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKV 186 +HEK+Q QN K QNL K + Q +K A A +++ VK E ++K V Sbjct: 167 VHEKVQNIDQNVAKGLQNLQKGI-----QEIKKGADNAAAKHEELVKQEEAIKKWV 217 >SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) Length = 454 Score = 29.5 bits (63), Expect = 0.62 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Frame = +1 Query: 1 EKQATALHEKLQTAIQNTLKESQNLAKEVGV---NMDQT----SQKLAPKLKAAYDDFVK 159 EKQ +K++ ++N LK+S NLA++ + D+T S++L +L A V Sbjct: 201 EKQEEKFDQKMRDKVRNKLKKSTNLAEDASQASGSSDKTLREESRRLQKELVGAKRKRVD 260 Query: 160 HAEEVQKKVHEAATK 204 + +KK E K Sbjct: 261 AENQTEKKEDERKNK 275 >SB_56150| Best HMM Match : Psf2 (HMM E-Value=1.7) Length = 873 Score = 29.5 bits (63), Expect = 0.62 Identities = 15/60 (25%), Positives = 36/60 (60%) Frame = +1 Query: 7 QATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKV 186 +A A ++ + + L++++++ E+ V + Q+L K+++ Y D VKHA+ + K++ Sbjct: 121 RALAPKQRQLKSAEAELEKAKSILGEMRVRGNAIKQELEEKIQS-YKDSVKHAKAIDKQI 179 >SB_35649| Best HMM Match : M (HMM E-Value=6e-09) Length = 1279 Score = 28.3 bits (60), Expect = 1.4 Identities = 16/65 (24%), Positives = 32/65 (49%) Frame = +1 Query: 1 EKQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQK 180 +KQA E+L + I+ ++++ L + D+T Q++ +L+A D + Sbjct: 1175 KKQAQLEKEELISVIEGMKEDAETLNSKFAQQQDETRQEIFQELQAQLDFSRNELTSEKS 1234 Query: 181 KVHEA 195 KV +A Sbjct: 1235 KVEKA 1239 >SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7) Length = 152 Score = 28.3 bits (60), Expect = 1.4 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +1 Query: 28 KLQTAIQNTLKES---QNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKV 186 K + A Q T++ +N AKE+ NMD+ Q+L + + DD + +++Q+ + Sbjct: 63 KAEQAEQETVRREKVVENDAKELQKNMDEEEQELKTEEEKELDDEKQARDKIQEAI 118 >SB_7096| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 412 Score = 27.9 bits (59), Expect = 1.9 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +1 Query: 49 NTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHE 192 + L + + L +E + +QKLA KL+ A + KH EE +K+ H+ Sbjct: 224 HALGQEKALIEEGRQQLTDMTQKLAEKLEHATSEMYKH-EEGRKQSHD 270 >SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037) Length = 396 Score = 27.1 bits (57), Expect = 3.3 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Frame = +1 Query: 1 EKQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEE-VQ 177 E+Q T + E + ++ + +N +E +DQ+ ++ +L+ Y++ K EE Sbjct: 41 ERQLTEMEEAREQVLEELTEYYENKLQEKTAQLDQSQEESRQQLR-EYEETKKQIEEDAD 99 Query: 178 KKVHEAATKQ*RALIARRVALSLRYNSCIIICNKHF 285 +++ + K R L + A +LR I K F Sbjct: 100 REILDIKNKYERRLREEKEA-NLRLKGETGIMRKKF 134 >SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 877 Score = 27.1 bits (57), Expect = 3.3 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +3 Query: 21 TREAANRHPEHTKGEPEPGEGSRRQHGSDLTETGAKTES 137 +R + N PE +G+P E SRR+ ++ + ++ES Sbjct: 469 SRASGNNTPEMKRGKPRTPEKSRRRKSPEVRKRTNESES 507 >SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6863 Score = 27.1 bits (57), Expect = 3.3 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = +1 Query: 40 AIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHE 192 A++ L++ + E V +D QK ++ + +DD K EE+Q+ + + Sbjct: 2353 AMEEELRQVNQMYTETRVQVD-VKQKALEQVASEWDDLEKGKEEIQRWISD 2402 >SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15) Length = 1001 Score = 26.6 bits (56), Expect = 4.4 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +1 Query: 43 IQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEAATKQ*RALI 222 I+ T +E ++ K + + D S K A KLK Y+ + + KKV +AA K+ LI Sbjct: 686 IKETEEERDHVLKNIKEH-DSESSKQAAKLKEEYEKKLGGLQTELKKV-QAAKKEHAQLI 743 Query: 223 ARRVALSLR 249 + +R Sbjct: 744 REKANNDMR 752 >SB_39885| Best HMM Match : KIP1 (HMM E-Value=1.2) Length = 102 Score = 26.6 bits (56), Expect = 4.4 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = +1 Query: 34 QTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEAATKQ*R 213 Q +T+K + AKEV + + +Q L +L+ A + K E+ + A T + Sbjct: 13 QRQASDTIKREHSKAKEVVHKLKEKNQNLKKELEEA-NTLKKEMEKTMSGDNAALTVKAE 71 Query: 214 ALIARRVALSLRYNS 258 AL+A L +S Sbjct: 72 ALLAENRLLQSHISS 86 >SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3934 Score = 26.6 bits (56), Expect = 4.4 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = +1 Query: 4 KQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQ 177 K T + +K ++ E Q +A+++ MD +L +LK YDD VK EEV+ Sbjct: 2783 KDETRMDKKRIATLEVEYAEKQGMARDLE-KMDDNLTEL--RLK--YDDLVKEREEVK 2835 >SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 569 Score = 26.6 bits (56), Expect = 4.4 Identities = 10/40 (25%), Positives = 26/40 (65%) Frame = +1 Query: 73 LAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHE 192 LA E+G + + +++L+ K + ++F + E+++++ HE Sbjct: 80 LAAELGKALLEKNEELSQKYEKLQEEFSQRVEQLEQEKHE 119 >SB_27968| Best HMM Match : Calx-beta (HMM E-Value=0.0037) Length = 260 Score = 26.2 bits (55), Expect = 5.8 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = +1 Query: 85 VGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEAAT 201 V +NMD ++ K+ DD ++ AE+ + K+ +T Sbjct: 106 VSINMDDKDNEMTCKIPTLADDLIEGAEDFKIKLATDST 144 >SB_13630| Best HMM Match : RVP (HMM E-Value=0.27) Length = 373 Score = 26.2 bits (55), Expect = 5.8 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -3 Query: 76 PGSGSPLVCSGWRFAASR 23 PGS SP+ C+ W ASR Sbjct: 217 PGSKSPMECTSWTQLASR 234 >SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20) Length = 610 Score = 26.2 bits (55), Expect = 5.8 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +1 Query: 1 EKQATALHEKLQTAIQNTLKESQN-LAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQ 177 +K+++ + +KLQ +QN + + N +AK ++ +LK + K+AEE Sbjct: 231 QKRSSQMADKLQDELQNAIDDRDNEIAKR---------NEIIRRLKNDIFNVDKNAEEQN 281 Query: 178 KKVHEAATKQ 207 K++ A+KQ Sbjct: 282 KRIVTEASKQ 291 >SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) Length = 2478 Score = 26.2 bits (55), Expect = 5.8 Identities = 20/58 (34%), Positives = 29/58 (50%) Frame = +1 Query: 4 KQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQ 177 K A +L ++ +ES+ AKE+ MD+ QKL LK A D+ HA E + Sbjct: 251 KNELASQSRLADLYKDESEESKKRAKEMQTAMDEL-QKL---LKEAVDESKVHALETE 304 >SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4) Length = 242 Score = 25.8 bits (54), Expect = 7.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 6 TSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDLTET 119 T HR TR H + T+ EP + R H +D T+T Sbjct: 125 TRHRPTRRRHEPHTDPTRTRHEPHTDTTRTH-TDPTQT 161 >SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1498 Score = 25.8 bits (54), Expect = 7.6 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = +1 Query: 4 KQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQ 177 KQA HE + + + +T+K QN+ K+VG + T + K++ DD + +E VQ Sbjct: 1280 KQAND-HE-IMSFMMHTVK--QNIGKQVGPAIKPTYVEPKTKIELQIDDIEEISENVQ 1333 >SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7) Length = 504 Score = 25.8 bits (54), Expect = 7.6 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +1 Query: 1 EKQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQK 180 E+ L EKL T NT Q+ A + L PK D F ++ EE+ + Sbjct: 89 ERVTKELEEKLDTLAFNTEDIEQDWALFKDTIQSTCNNFLGPKTHCHQDWFDENNEEINR 148 Query: 181 KVHE 192 + E Sbjct: 149 LIDE 152 >SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8) Length = 171 Score = 25.8 bits (54), Expect = 7.6 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = +1 Query: 85 VGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQ 177 +G+N++ L K+ + D KH EE++ Sbjct: 76 LGINVELAGHPLGKKVSRPFMDLEKHLEEIE 106 >SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20) Length = 906 Score = 25.8 bits (54), Expect = 7.6 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +1 Query: 1 EKQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQK 180 E+ L EKL T NT Q+ A + L PK D F ++ EE+ + Sbjct: 189 ERVTKELEEKLDTLAFNTEDIEQDWALFKDTIQSTCNNILGPKTHCHQDWFDENNEEINR 248 Query: 181 KVHE 192 + E Sbjct: 249 LIDE 252 >SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0) Length = 535 Score = 25.8 bits (54), Expect = 7.6 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 25 EKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKL 132 +KL TA +N+ + QNLAKE N + + + K+ Sbjct: 343 QKLITAAENSAEYRQNLAKEKTNNFRREKKPIKKKV 378 >SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) Length = 340 Score = 25.8 bits (54), Expect = 7.6 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = +1 Query: 85 VGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQ 177 +G+N++ L K+ + D KH EE++ Sbjct: 76 LGINVELAGHPLGKKVSRPFMDLEKHLEEIE 106 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,104,621 Number of Sequences: 59808 Number of extensions: 121730 Number of successful extensions: 454 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 396 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 454 length of database: 16,821,457 effective HSP length: 72 effective length of database: 12,515,281 effective search space used: 413004273 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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