Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K11
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 31 0.099
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.30
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.53
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|... 28 0.92
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 2.1
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 2.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.7
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 6.5
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 31.5 bits (68), Expect = 0.099
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +1
Query: 49 YSKNTVQS-HRN*IAASIHFW--TVSHRAWTR-THAAIS--LQSRTVPTSSSTSYATKME 210
Y+ N+ S H S W + S +AW R T ++S ++S+T+P STSY ++E
Sbjct: 18 YNGNSFNSIHATSFGMSPQSWGNSFSGQAWLRDTIPSLSNVVESQTIPEEDSTSYLNRLE 77
Query: 211 TESLCSSLR 237
E+ C R
Sbjct: 78 -EAFCRDFR 85
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.9 bits (64), Expect = 0.30
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 315 AEAANSLSTAEKCGKYDQLTTCVVNSLEQCSNPTPGNMA 431
++A N S +C KY QL +C V QCSN N A
Sbjct: 297 SKATNDCSGHGRCSKYGQLDSCYVC---QCSNSVVSNAA 332
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.53
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 109 TVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETES--LCSSLRAVLSACKRRLIQSRL 282
T+S ++ T A+ + S P+SSST+ ++ + S + SS+ + +S+ + S
Sbjct: 128 TISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSS 187
Query: 283 VSLS*KTASLTLKPLTA 333
S S +S K ++A
Sbjct: 188 ASSSGSISSADAKTVSA 204
>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 106
Score = 28.3 bits (60), Expect = 0.92
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 192 ICYKDGDRIALFIAESGPECLQEKADSIKTCFTKLKDSFPNAEAANSLSTAEKCGKYDQL 371
+CY+ D + IA +GP+ ++ + D T++ DSF +T+ G QL
Sbjct: 11 VCYQPEDTTFIIIASNGPDVMRWRKDK-TVPLTEIVDSF------QVFTTSNNKGNEGQL 63
Query: 372 TTCVVNSLE 398
T LE
Sbjct: 64 ITASKQELE 72
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +1
Query: 178 SSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVSLS*KTASLTLKPLTAFLPPKS 351
SS SYA + S+ S C R L ++ SL + L + A LPPKS
Sbjct: 150 SSFLSYALRDGKPSVADSAIKSTRRCYRSLFCKKMDSLKKLVSFLLTETENAILPPKS 207
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/97 (21%), Positives = 43/97 (44%)
Frame = +3
Query: 48 VFKKYCAKSPQLNSCINSLLDGVSPCVDPNARGHLASVKNSTNQLVDFICYKDGDRIALF 227
V K +PQL+ + +LL+ +SP D + ++ +K++T+++ + +
Sbjct: 103 VDKSLLGPTPQLSRRVLNLLEDMSPIADSHV-DQISDIKHNTSEISSTMIPTTPSKNPEP 161
Query: 228 IAESGPECLQEKADSIKTCFTKLKDSFPNAEAANSLS 338
+A+ P L+ + +T NA SLS
Sbjct: 162 VAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSLS 198
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +1
Query: 160 SRTVPTSSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVSLS*KTASLTLKPLTAFL 339
S PTS+S+SY + + S+ SS + S+ L S L + S + S + ++ L
Sbjct: 198 SSAAPTSTSSSY---LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSL 254
Query: 340 PPKSAANTIS 369
S+++T S
Sbjct: 255 SSSSSSSTAS 264
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 605 FFCRFYYYGVFIVIHFTMIHIIYN*L*RITNFP-LLNVP 492
FFC F+Y+ +F F + +N R+ LL++P
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLLDIP 145
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 160 SRTVPTSSSTSYATKMETESLCSSLRAVLS 249
S +VP+SSS+ +++ M T L SS V S
Sbjct: 147 SSSVPSSSSSYHSSSMTTSGLSSSASIVSS 176
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 6.5
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 105 LDGVSPCVDPNARGHLASVKNSTNQL-VDFICYKDGDRIALFIAESGPECLQEKADSIKT 281
L+ VSP +DP L ++++ L + + + ++ P Q +++T
Sbjct: 663 LNEVSPSLDPRISKSLRNLQDLYKLLAIRDTSFSNTTPSSISKLSIQPPTFQ-LFSTLET 721
Query: 282 CFTKLKDSFPNAEAANSLSTAEKC 353
+ +LKDS P EAA+ + C
Sbjct: 722 IYLELKDSMPPNEAADWMIATTSC 745
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,129
Number of Sequences: 5004
Number of extensions: 45872
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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