Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K11
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27270.1 68416.m03408 expressed protein                             30   1.4  
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati...    29   1.8  
At5g26230.1 68418.m03123 expressed protein predicted protein, Ar...    29   2.4  
At1g21160.1 68414.m02646 eukaryotic translation initiation facto...    28   4.2  
At1g15720.1 68414.m01886 myb family transcription factor contain...    28   5.5  
At5g10500.1 68418.m01216 kinase interacting family protein simil...    27   7.3  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    27   7.3  
At5g45570.1 68418.m05596 Ulp1 protease family protein contains P...    27   9.6  
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    27   9.6  

>At3g27270.1 68416.m03408 expressed protein 
          Length = 249

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
 Frame = +3

Query: 48  VFKKYCAKS-PQLNSCINSLLDGVSPCV--------DPNARGHLASVKNSTNQLVDF 191
           +FKK+  ++ P  +SC+ SLL GVS  V        DPN RG  +    S N ++DF
Sbjct: 28  IFKKWTPETRPLASSCLISLLHGVSAVVLATNALLSDPN-RGFSSVNTQSQNSILDF 83


>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
           similar to mitochondrial elongation factor GI:3917 from
           [Saccharomyces cerevisiae]
          Length = 754

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +3

Query: 6   NEIEEAKPNGALDEVFKKYCAKSPQLNSCINSLLDG-VSPCVDPNARGHLASVKNSTNQL 182
           +E+EEA     + + F      S   N  +  LLDG VS    PN   + A  +N+  + 
Sbjct: 296 SELEEAIRRATIAQTFVPVFMGSAFKNKGVQPLLDGVVSFLPSPNEVNNYALDQNNNEER 355

Query: 183 VDFICYKDGDRIAL-FIAESG 242
           V      DG  +AL F  E G
Sbjct: 356 VTLTGSPDGPLVALAFKLEEG 376


>At5g26230.1 68418.m03123 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 341

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 136 THAAISLQSRTVPTSSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVS 288
           T     +   +  +SSS + +     E L S+++  ++ CK  ++Q  LVS
Sbjct: 287 TRGGFPVHQGSCSSSSSNNNSVSSSMEELQSAIQGAIAHCKNSMLQKNLVS 337


>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
            family protein / eIF-2 family protein similar to
            SP|O60841 Translation initiation factor IF-2 {Homo
            sapiens}; contains Pfam profiles PF00009: Elongation
            factor Tu GTP binding domain, PF03144: Elongation factor
            Tu domain 2
          Length = 1088

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 144  GHLASVKNSTNQLVDFICYKDGDRIALFIAESGPE 248
            G ++S+KN+ N  VD+   + G  +A+ I  S PE
Sbjct: 1003 GRVSSIKNNNNMPVDYA--RKGQEVAIKIIASNPE 1035


>At1g15720.1 68414.m01886 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 390

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 418 RGIWPILSSDLFVRDSLARRTDNSTGTLSK 507
           R +WP+ +SD F  D+L R   N  GTL +
Sbjct: 99  RFMWPVNASDGFFGDALERIWRNRIGTLKE 128


>At5g10500.1 68418.m01216 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 848

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 246 ECLQEKADSIKTCFTKLKDSFPNAEAANSLSTAEKCGKYDQLTTCVVN 389
           E   EK + +++   K+ D F ++EA + L+  +   K D+L   V+N
Sbjct: 302 EIYSEK-EKLESLGEKVNDEFDDSEAKSCLTIPDVADKIDELVNDVIN 348


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 252  LQEKADSIKTCFTKLKDSFPNAEAANSLSTAEKCGKYDQLTTCVVNSLEQCSNPTPGN 425
            L+     +++C T  ++     EA NSLS+   C +  +    VV  +  C   TP N
Sbjct: 1330 LKGGVSDLRSCITMCQEHDKYTEAENSLSSPAHCSEGQEPGRNVV--VSSCIEKTPNN 1385


>At5g45570.1 68418.m05596 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At4g08430, At5g28235
          Length = 921

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 312 NAEAANSLSTAEKCGKYDQLTTCVVNSLEQCSNPTP 419
           N EAA  + T +K  KYD+  T V  ++E+   P P
Sbjct: 497 NKEAATKVLTKKKVAKYDKKKTIV--NVEKVEKPKP 530


>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1167

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 146  PSRFSQEQYQPARRLHMLQRWRQNRFV 226
            PS F  E      +L++L  W +NRFV
Sbjct: 955  PSWFCHEAVGSVLKLNLLPHWNENRFV 981


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,999,280
Number of Sequences: 28952
Number of extensions: 238308
Number of successful extensions: 705
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)