SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K10
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008...   192   1e-49
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    31   0.45 
02_02_0609 + 12105616-12106336,12106514-12106646,12107849-121080...    30   1.0  
12_02_0674 - 21745321-21746223,21746229-21747608                       30   1.4  
04_01_0023 + 337349-337741                                             29   1.8  
11_01_0192 - 1523572-1526097                                           29   2.4  
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468     28   5.5  
10_07_0131 + 13258506-13258628,13258737-13258889                       27   7.3  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           27   7.3  
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135     27   7.3  
01_06_1704 + 39305989-39306186,39306282-39306789,39307094-393071...    27   9.7  

>09_04_0315 +
           16600387-16600557,16600652-16600801,16600874-16600897,
           16601519-16602694,16603120-16603266,16603477-16603752
          Length = 647

 Score =  192 bits (469), Expect = 1e-49
 Identities = 89/137 (64%), Positives = 108/137 (78%)
 Frame = +2

Query: 2   KTDPDSLTTEEKTKFARLNIDPSNIMWNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDI 181
           KTDP+ LT +E  +FARL+IDP +I W RV+D+NDR+LRKITIGQ P EKG  RET FDI
Sbjct: 216 KTDPNELTPDEVRRFARLDIDPESITWRRVMDVNDRFLRKITIGQGPDEKGMVRETGFDI 275

Query: 182 SVASEIMAILSLGNDVDDIKERLANMVVALDKDGNAVTADDLGITGALLVLLRDAFEPTL 361
           +VASEIMA+L+L   + D++ERL  MV+   K G  +TADDLG+ GAL VL++DA  PTL
Sbjct: 276 AVASEIMAVLALTTSLADMRERLGRMVIGNSKAGEPITADDLGVGGALTVLMKDAIHPTL 335

Query: 362 MQTLEGTPVLVHTGPFA 412
           MQTLEGTPVLVH GPFA
Sbjct: 336 MQTLEGTPVLVHAGPFA 352



 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +1

Query: 466 LLARNGYVATEAGFGSDIGMEKF 534
           L+ + GYV TEAGFGSDIG EKF
Sbjct: 370 LVGKGGYVVTEAGFGSDIGTEKF 392



 Score = 36.3 bits (80), Expect = 0.016
 Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
 Frame = +3

Query: 399 LVHS---LNIAHGCSSILADKIAMKLAGE 476
           LVH+    NIAHG SSI+ADKIA+KL G+
Sbjct: 345 LVHAGPFANIAHGNSSIVADKIALKLVGK 373


>09_06_0055 -
           20550889-20551531,20551612-20551889,20552035-20552203,
           20552397-20552534,20553945-20553997,20554521-20554574,
           20556062-20556295,20556399-20556986,20557065-20557419,
           20557494-20557694,20557925-20557998,20558114-20558254,
           20558611-20558670,20558750-20558806,20559281-20559318,
           20559419-20559578
          Length = 1080

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 308 PSHQLLQHFRPYRGPPPC*QDVPLYHP 228
           P+H LL H  P+RG P     VPL  P
Sbjct: 827 PNHSLLTHLHPHRGTPSSHHHVPLEWP 853


>02_02_0609 +
           12105616-12106336,12106514-12106646,12107849-12108048,
           12108184-12108635,12109018-12109323
          Length = 603

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/84 (19%), Positives = 37/84 (44%)
 Frame = -3

Query: 313 DTQVISCYSISVLIEGHHHVSKTFLYIIHIIA*RQYRHDL*RDRYIEGSLTSEAFLSRRL 134
           D    +C+ +  ++  H + S+T  +++H      ++H +   RY         F  R+L
Sbjct: 224 DLDCSNCHLVREMM--HANASRTIYFLVHATGVGSFQHAIVDRRYTATGAEGLHFPGRQL 281

Query: 133 TNRDLTQVSVVQVHNSVPHNIRRI 62
              DLT  ++    + +  N+ ++
Sbjct: 282 LYFDLTNHTIESASDFIASNVEKL 305


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
 Frame = -1

Query: 393 TRTG-VPSKVC---IKVGSNASRNNTRRAPVIPKSSAVTAFPS---LSRATTMLARRSFI 235
           T TG +PS  C   +   +  + +    +P+   +S  ++ PS   LS +T  +   +  
Sbjct: 567 TATGKIPSTTCTSPLSTATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTART 626

Query: 234 SSTSLPKDNIAMISDATDISKAVSRV 157
              S P D I   + A D+S A S++
Sbjct: 627 GELSTPTDKIPTTTRAGDLSTATSKI 652


>04_01_0023 + 337349-337741
          Length = 130

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 179 ISVASEIMAILSLGND----VDDIKERLANMVVALDKDGNAVTADDLGITGALLVL 334
           ++VASE+ +ILS  ND     D+ KE     ++ L  + N  T +  G    L+V+
Sbjct: 10  VNVASEVSSILSKLNDHLAGADEAKEPAGTSIITLAGENNGATMEVAGDVEDLVVV 65


>11_01_0192 - 1523572-1526097
          Length = 841

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 342 SRNNTRRAPVIPKSSAVTAFPSLSRATTMLARRSFISSTSLPKDNIAMISD-ATDI 178
           S+N +R A  +P  +AV  F SLSR     ARR      SLP+     + D ATD+
Sbjct: 2   SKNCSRAAATVPLLAAVVVFLSLSRPFPCEARRD-----SLPRGASIDVEDHATDL 52


>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
          Length = 898

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +2

Query: 125  TIGQSPTEKGFTRETAFDISVASEIMAILSLGNDVDDIKERLANMVVALDKDGNAVTADD 304
            T+GQ P++  F  +  F++      +A  S  + + D+++ LA  V +++     V+  +
Sbjct: 833  TVGQKPSKARFYLDDTFEVVTMLSSLADASEPDLMADLEDDLATSVSSIEISDRVVSFSN 892

Query: 305  LGITGA 322
            L   G+
Sbjct: 893  LRTEGS 898


>10_07_0131 + 13258506-13258628,13258737-13258889
          Length = 91

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 206 ILSLGNDVDDIKERLANMVVALD 274
           I SL  +VDD+ ERLA ++ A D
Sbjct: 55  IRSLHREVDDLSERLAELLAAAD 77


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 22/87 (25%), Positives = 39/87 (44%)
 Frame = +2

Query: 29  EEKTKFARLNIDPSNIMWNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDISVASEIMAI 208
           + K  F      P  I +N+ +   D   ++ TI      KG      F   V  EI A+
Sbjct: 454 KSKMSFQATKRKPKRI-YNKNIRTQDTESKE-TICYKCGLKGHIANRCFKSKVKKEIQAL 511

Query: 209 LSLGNDVDDIKERLANMVVALDKDGNA 289
           L   ++ +D+KE+L  ++  +D D ++
Sbjct: 512 LD--SESEDVKEKLEAILNNIDNDSSS 536


>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
          Length = 1275

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 22/87 (25%), Positives = 39/87 (44%)
 Frame = +2

Query: 29   EEKTKFARLNIDPSNIMWNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDISVASEIMAI 208
            + K  F      P  I +N+ +   D   ++ TI      KG      F   V  EI A+
Sbjct: 773  KSKMSFQATKRKPKRI-YNKNIRTQDTESKE-TICYKCGLKGHIANRCFKSKVKKEIQAL 830

Query: 209  LSLGNDVDDIKERLANMVVALDKDGNA 289
            L   ++ +D+KE+L  ++  +D D ++
Sbjct: 831  LD--SESEDVKEKLEAILNNIDNDSSS 855


>01_06_1704 +
           39305989-39306186,39306282-39306789,39307094-39307137,
           39307243-39307398,39307431-39307549,39308176-39308950
          Length = 599

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 402 VHSLNIAHGCSSILADKIAMKLAGEK 479
           +HSL I   C+S   D+  +K AGEK
Sbjct: 330 LHSLRIKFICNSRFLDRATVKTAGEK 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,671,376
Number of Sequences: 37544
Number of extensions: 299150
Number of successful extensions: 791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -