Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K10
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008... 192 1e-49
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522... 31 0.45
02_02_0609 + 12105616-12106336,12106514-12106646,12107849-121080... 30 1.0
12_02_0674 - 21745321-21746223,21746229-21747608 30 1.4
04_01_0023 + 337349-337741 29 1.8
11_01_0192 - 1523572-1526097 29 2.4
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 28 5.5
10_07_0131 + 13258506-13258628,13258737-13258889 27 7.3
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 27 7.3
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 27 7.3
01_06_1704 + 39305989-39306186,39306282-39306789,39307094-393071... 27 9.7
>09_04_0315 +
16600387-16600557,16600652-16600801,16600874-16600897,
16601519-16602694,16603120-16603266,16603477-16603752
Length = 647
Score = 192 bits (469), Expect = 1e-49
Identities = 89/137 (64%), Positives = 108/137 (78%)
Frame = +2
Query: 2 KTDPDSLTTEEKTKFARLNIDPSNIMWNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDI 181
KTDP+ LT +E +FARL+IDP +I W RV+D+NDR+LRKITIGQ P EKG RET FDI
Sbjct: 216 KTDPNELTPDEVRRFARLDIDPESITWRRVMDVNDRFLRKITIGQGPDEKGMVRETGFDI 275
Query: 182 SVASEIMAILSLGNDVDDIKERLANMVVALDKDGNAVTADDLGITGALLVLLRDAFEPTL 361
+VASEIMA+L+L + D++ERL MV+ K G +TADDLG+ GAL VL++DA PTL
Sbjct: 276 AVASEIMAVLALTTSLADMRERLGRMVIGNSKAGEPITADDLGVGGALTVLMKDAIHPTL 335
Query: 362 MQTLEGTPVLVHTGPFA 412
MQTLEGTPVLVH GPFA
Sbjct: 336 MQTLEGTPVLVHAGPFA 352
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 466 LLARNGYVATEAGFGSDIGMEKF 534
L+ + GYV TEAGFGSDIG EKF
Sbjct: 370 LVGKGGYVVTEAGFGSDIGTEKF 392
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
Frame = +3
Query: 399 LVHS---LNIAHGCSSILADKIAMKLAGE 476
LVH+ NIAHG SSI+ADKIA+KL G+
Sbjct: 345 LVHAGPFANIAHGNSSIVADKIALKLVGK 373
>09_06_0055 -
20550889-20551531,20551612-20551889,20552035-20552203,
20552397-20552534,20553945-20553997,20554521-20554574,
20556062-20556295,20556399-20556986,20557065-20557419,
20557494-20557694,20557925-20557998,20558114-20558254,
20558611-20558670,20558750-20558806,20559281-20559318,
20559419-20559578
Length = 1080
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 308 PSHQLLQHFRPYRGPPPC*QDVPLYHP 228
P+H LL H P+RG P VPL P
Sbjct: 827 PNHSLLTHLHPHRGTPSSHHHVPLEWP 853
>02_02_0609 +
12105616-12106336,12106514-12106646,12107849-12108048,
12108184-12108635,12109018-12109323
Length = 603
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/84 (19%), Positives = 37/84 (44%)
Frame = -3
Query: 313 DTQVISCYSISVLIEGHHHVSKTFLYIIHIIA*RQYRHDL*RDRYIEGSLTSEAFLSRRL 134
D +C+ + ++ H + S+T +++H ++H + RY F R+L
Sbjct: 224 DLDCSNCHLVREMM--HANASRTIYFLVHATGVGSFQHAIVDRRYTATGAEGLHFPGRQL 281
Query: 133 TNRDLTQVSVVQVHNSVPHNIRRI 62
DLT ++ + + N+ ++
Sbjct: 282 LYFDLTNHTIESASDFIASNVEKL 305
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = -1
Query: 393 TRTG-VPSKVC---IKVGSNASRNNTRRAPVIPKSSAVTAFPS---LSRATTMLARRSFI 235
T TG +PS C + + + + +P+ +S ++ PS LS +T + +
Sbjct: 567 TATGKIPSTTCTSPLSTATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTART 626
Query: 234 SSTSLPKDNIAMISDATDISKAVSRV 157
S P D I + A D+S A S++
Sbjct: 627 GELSTPTDKIPTTTRAGDLSTATSKI 652
>04_01_0023 + 337349-337741
Length = 130
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 179 ISVASEIMAILSLGND----VDDIKERLANMVVALDKDGNAVTADDLGITGALLVL 334
++VASE+ +ILS ND D+ KE ++ L + N T + G L+V+
Sbjct: 10 VNVASEVSSILSKLNDHLAGADEAKEPAGTSIITLAGENNGATMEVAGDVEDLVVV 65
>11_01_0192 - 1523572-1526097
Length = 841
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 342 SRNNTRRAPVIPKSSAVTAFPSLSRATTMLARRSFISSTSLPKDNIAMISD-ATDI 178
S+N +R A +P +AV F SLSR ARR SLP+ + D ATD+
Sbjct: 2 SKNCSRAAATVPLLAAVVVFLSLSRPFPCEARRD-----SLPRGASIDVEDHATDL 52
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = +2
Query: 125 TIGQSPTEKGFTRETAFDISVASEIMAILSLGNDVDDIKERLANMVVALDKDGNAVTADD 304
T+GQ P++ F + F++ +A S + + D+++ LA V +++ V+ +
Sbjct: 833 TVGQKPSKARFYLDDTFEVVTMLSSLADASEPDLMADLEDDLATSVSSIEISDRVVSFSN 892
Query: 305 LGITGA 322
L G+
Sbjct: 893 LRTEGS 898
>10_07_0131 + 13258506-13258628,13258737-13258889
Length = 91
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 206 ILSLGNDVDDIKERLANMVVALD 274
I SL +VDD+ ERLA ++ A D
Sbjct: 55 IRSLHREVDDLSERLAELLAAAD 77
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = +2
Query: 29 EEKTKFARLNIDPSNIMWNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDISVASEIMAI 208
+ K F P I +N+ + D ++ TI KG F V EI A+
Sbjct: 454 KSKMSFQATKRKPKRI-YNKNIRTQDTESKE-TICYKCGLKGHIANRCFKSKVKKEIQAL 511
Query: 209 LSLGNDVDDIKERLANMVVALDKDGNA 289
L ++ +D+KE+L ++ +D D ++
Sbjct: 512 LD--SESEDVKEKLEAILNNIDNDSSS 536
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = +2
Query: 29 EEKTKFARLNIDPSNIMWNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDISVASEIMAI 208
+ K F P I +N+ + D ++ TI KG F V EI A+
Sbjct: 773 KSKMSFQATKRKPKRI-YNKNIRTQDTESKE-TICYKCGLKGHIANRCFKSKVKKEIQAL 830
Query: 209 LSLGNDVDDIKERLANMVVALDKDGNA 289
L ++ +D+KE+L ++ +D D ++
Sbjct: 831 LD--SESEDVKEKLEAILNNIDNDSSS 855
>01_06_1704 +
39305989-39306186,39306282-39306789,39307094-39307137,
39307243-39307398,39307431-39307549,39308176-39308950
Length = 599
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 402 VHSLNIAHGCSSILADKIAMKLAGEK 479
+HSL I C+S D+ +K AGEK
Sbjct: 330 LHSLRIKFICNSRFLDRATVKTAGEK 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,671,376
Number of Sequences: 37544
Number of extensions: 299150
Number of successful extensions: 791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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