Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K10
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)                      157   4e-39
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)              34   0.086
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)           30   1.1  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   2.5  
SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16)                29   3.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)              28   5.7  
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)                     28   5.7  
SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)                  27   7.5  
SB_40793| Best HMM Match : Toxin_30 (HMM E-Value=9.6)                  27   7.5  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 27   9.9  

>SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)
          Length = 388

 Score =  157 bits (382), Expect = 4e-39
 Identities = 74/109 (67%), Positives = 89/109 (81%)
 Frame = +2

Query: 86  RVVDLNDRYLRKITIGQSPTEKGFTRETAFDISVASEIMAILSLGNDVDDIKERLANMVV 265
           +V+D NDRYLRKITIGQSPTE+  TRET FDI+VASEIMAIL+L  D  D+++RL N+VV
Sbjct: 46  KVIDTNDRYLRKITIGQSPTEQNRTRETQFDITVASEIMAILALTTDFRDMRDRLGNIVV 105

Query: 266 ALDKDGNAVTADDLGITGALLVLLRDAFEPTLMQTLEGTPVLVHTGPFA 412
           A D+ G  VTADDLG+ GAL VL++D  +P +MQTLEGTPV VH GPFA
Sbjct: 106 ASDRHGQPVTADDLGVGGALAVLMKDTIKPNMMQTLEGTPVFVHAGPFA 154



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +3

Query: 414 NIAHGCSSILADKIAMKLAG 473
           NIAHG SSILADKIA+KL G
Sbjct: 155 NIAHGNSSILADKIALKLVG 174


>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
          Length = 1027

 Score = 33.9 bits (74), Expect = 0.086
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
 Frame = -1

Query: 393 TRTGVPSKVCIKVGSNASRNNTRRAPVIPKSSAVTAFPSLSRAT---TMLARRSFISSTS 223
           T T +PS+  + +    SRN     P IP  + +T  P  SR     T +  R+ I+ TS
Sbjct: 358 TLTPIPSRTLLTLNPIPSRNLLTLTP-IPSRNLLTLTPIPSRTLLTLTPIPSRNLITLTS 416

Query: 222 LPKDNIAMISDATDISKAVSRVKPFSVGD*PIVILRRYLSF 100
           +P   +        + + VS V   ++GD    +L + L +
Sbjct: 417 IPSRTLLTQCGIDQLLRNVSDVSIAAMGDDRCFLLTKALGY 457


>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
          Length = 721

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = -3

Query: 475 SPASFIAILSASIDEQPCAMLSEWTSVNENRSAL*GLHQSRLKRVAQQHQKSSCDTQVIS 296
           S       + A  D    A+   W  +++  S    ++Q  L  V+ Q  K      V S
Sbjct: 77  SQIGLFTAIEAEPDISASAVGDAWLLISKEDSEGSPINQYDLT-VSVQLNKHDSKCFVKS 135

Query: 295 CYSISVLIEGHHHVSK-TFLYIIHII 221
           C S++ LI+   HVSK  FL+ +H +
Sbjct: 136 CQSLTFLIQDCAHVSKENFLHCVHAV 161


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -1

Query: 387  TGVP--SKVCIKVGSNASRNNTRRAPVIPKSSAVTAFPSLSRATTMLARRSFISSTSLPK 214
            +G+P  S   +++ SNA R+ T R+  +  ++      SLS   ++L   + +SS+  P 
Sbjct: 891  SGIPLASSADLELTSNALRSVTHRSEELSSTAQAAGLKSLSNIGSVL---TALSSSDTPA 947

Query: 213  DNIAMISDATDISKAVSRVKPFSVG 139
            D +  I  A   S A       S+G
Sbjct: 948  DTVERIGKAVLTSLASIMEAALSLG 972


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 137  SPTEKGFTRETAFDISVASEIMAI--LSLGNDVDDIKERLANMVV--ALDKDGNAVTADD 304
            S  +K F  +   ++  A E + +   S  N+VDD++E+L+ +     L KD N    DD
Sbjct: 2579 SSKDKNFIEKKLTNLQTAYEELRLEKTSKQNEVDDLREKLSQIEKEHVLSKDSNYSLQDD 2638

Query: 305  L 307
            L
Sbjct: 2639 L 2639


>SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16)
          Length = 879

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/73 (24%), Positives = 38/73 (52%)
 Frame = +2

Query: 35  KTKFARLNIDPSNIMWNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDISVASEIMAILS 214
           ++K+  +N  P N+ W   V    ++L++     +P  K   ++T   +++ SE+    +
Sbjct: 97  QSKYYEMN--PDNVAWQPEVPDRRKHLKERYFPYNPDPKQLKKKTDAALALLSEVN---N 151

Query: 215 LGNDVDDIKERLA 253
           +G DV+ +K R A
Sbjct: 152 MGIDVNGLKPREA 164


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 429  CSSILADKIAMKLAGEKRICSY 494
            C  +LAD +A+K    K+IC Y
Sbjct: 3800 CRGLLADALALKAVDRKKICIY 3821


>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -1

Query: 348 NASRNNTRRAPVIPKSSAVTAFPSLSRATTMLARRSFISSTSLPKDNIAMISDA--TDIS 175
           N++   T      PK+   TA  S   ++      SF+ S S PK   A ++ A     S
Sbjct: 417 NSNTTTTTSTIATPKTPDTTAASSADTSSPNAPTPSFVQSNSQPKPKPAWLTQAPTQQTS 476

Query: 174 KAVSRVKP 151
             V+ +KP
Sbjct: 477 GLVAPIKP 484


>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 21/61 (34%), Positives = 24/61 (39%)
 Frame = -2

Query: 404 DQCEREPECPLRFASKSAQTRRATTPEELL*YPSHQLLQHFRPYRGPPPC*QDVPLYHPH 225
           D CE +    L+       T RA  PE  L YP H   QH+R             LYH H
Sbjct: 125 DTCEADFTDALQLTPGEPCTTRALVPEPALYYPHH---QHYRSM-----IVYSRHLYHHH 176

Query: 224 H 222
           H
Sbjct: 177 H 177


>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
          Length = 597

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -1

Query: 342 SRNNTRRAPVIPKSSAVTAFPSLSRATT-----MLARRSFISSTSLPKDNIAMISDATDI 178
           SR    + P  P++  +T  P     TT     + ARR  +SS + P++   +ISD+  +
Sbjct: 345 SRKGKSQEPSSPRALGLTGIPVSDGDTTPRGIPLPARRISVSSDNEPEEPPKLISDSVQV 404

Query: 177 S 175
           S
Sbjct: 405 S 405


>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
          Length = 1381

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -1

Query: 342 SRNNTRRAPVIPKSSAVTAFPSLSRATT-----MLARRSFISSTSLPKDNIAMISDATDI 178
           SR    + P  P++  +T  P     TT     + ARR  +SS + P++   +ISD+  +
Sbjct: 290 SRKGKSQEPSSPRALGLTGIPVSDGDTTPRGIPLPARRISVSSDNEPEEPPKLISDSVQV 349

Query: 177 S 175
           S
Sbjct: 350 S 350


>SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)
          Length = 1451

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 77   MWNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDISVASEIMAIL 211
            +W R+ +  D+Y + +    +   KG   ++  DIS+A +IM  L
Sbjct: 1286 VW-RICNYKDKYKKAVAFATNQEVKGGNSDSDDDISMAGDIMVSL 1329


>SB_40793| Best HMM Match : Toxin_30 (HMM E-Value=9.6)
          Length = 217

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 278 DGNAVTADDLGITGALLVLLRDAFEPTLMQTLE 376
           DG+    DD G+T +L +LL DA E    +TL+
Sbjct: 156 DGSDEFDDDDGLTDSLDILLNDADEEEFNETLD 188


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 167 TAFDISVASEIMAILSL-GNDVDDIKERLANMVVALDKDGNAVTADDLGITG 319
           T+ D+ + S+ + + S  GN  DD+   L +  V L  DG  +T+DD+ +TG
Sbjct: 472 TSDDVHLTSDDVHLTSDDGNLTDDV--HLTSNDVYLTSDGVHLTSDDVHLTG 521


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,917,954
Number of Sequences: 59808
Number of extensions: 345497
Number of successful extensions: 839
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)