Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K10
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50480.1 68414.m05660 formate--tetrahydrofolate ligase / 10-f... 197 5e-51
At2g47280.1 68415.m05903 pectinesterase family protein contains ... 29 2.0
At1g32240.1 68414.m03966 myb family transcription factor (KAN2) ... 29 2.0
At5g56430.1 68418.m07044 F-box family protein contains F-box dom... 28 3.5
At1g75530.1 68414.m08778 forkhead-associated domain-containing p... 28 3.5
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r... 27 6.1
At2g22480.1 68415.m02667 phosphofructokinase family protein simi... 27 6.1
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored... 27 6.1
At5g19680.1 68418.m02341 leucine-rich repeat family protein cont... 27 8.1
At2g44940.1 68415.m05594 AP2 domain-containing transcription fac... 27 8.1
>At1g50480.1 68414.m05660 formate--tetrahydrofolate ligase /
10-formyltetrahydrofolate synthetase (THFS) identical to
10-formyltetrahydrofolate synthetase (Arabidopsis
thaliana) GI:5921663
Length = 634
Score = 197 bits (480), Expect = 5e-51
Identities = 92/137 (67%), Positives = 110/137 (80%)
Frame = +2
Query: 2 KTDPDSLTTEEKTKFARLNIDPSNIMWNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDI 181
KT P+ LT EE KFARL+IDP++I W RV+D+NDR+LRKITIGQ P EKG TRET FDI
Sbjct: 203 KTSPEELTPEEIKKFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMTRETGFDI 262
Query: 182 SVASEIMAILSLGNDVDDIKERLANMVVALDKDGNAVTADDLGITGALLVLLRDAFEPTL 361
SVASEIMA+L+L + D++ERL MV+ K G+ +TADDLG+ GAL VL++DA PTL
Sbjct: 263 SVASEIMAVLALTTSLGDMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTL 322
Query: 362 MQTLEGTPVLVHTGPFA 412
MQTLEGTPVLVH GPFA
Sbjct: 323 MQTLEGTPVLVHAGPFA 339
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1
Query: 466 LLARNGYVATEAGFGSDIGMEKF 534
L+ G+V TEAGFGSDIG EKF
Sbjct: 357 LVGPGGFVVTEAGFGSDIGTEKF 379
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/28 (67%), Positives = 22/28 (78%), Gaps = 3/28 (10%)
Frame = +3
Query: 399 LVHS---LNIAHGCSSILADKIAMKLAG 473
LVH+ NIAHG SSI+ADKIA+KL G
Sbjct: 332 LVHAGPFANIAHGNSSIVADKIALKLVG 359
>At2g47280.1 68415.m05903 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 320
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 56 NIDPSNIMWNRVVDLNDRYLRKITIGQSPTEKGF 157
+I P N W RV N Y K+TI P EKGF
Sbjct: 38 SISPPNHNWIRVFTQNGIYREKVTI---PKEKGF 68
>At1g32240.1 68414.m03966 myb family transcription factor (KAN2)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA GARP-like putative
transcription factor KANADI2 (KAN2) GI:15723594
Length = 388
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = -2
Query: 386 PECPLRFASKSAQTRRATTPEELL*YPSHQLLQHFRPYRGPPPC*QDVPLYHPH 225
P C S Q + L + +H L H RP RG P P +HPH
Sbjct: 93 PNCNSSNILTSFQFPTQQQQQHLQGFLAHDLNTHLRPIRGIPLYHNPPPHHHPH 146
>At5g56430.1 68418.m07044 F-box family protein contains F-box domain
Pfam:PF00646
Length = 360
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 108 DTCVRSRL--VNLLLRKASLVRLPSIYLSRQRSW 203
+ CV L +NL+LR++ +R +Y SR+R+W
Sbjct: 232 ELCVMCSLDWLNLILRRSPKLRSLKLYQSRERNW 265
>At1g75530.1 68414.m08778 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 555
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 161 RETAFDISVASEIMAILSLGNDVDDIKERLANMVVALDKDG-NAVTADDLGITGALLVLL 337
R T DI ++ GN++DD +R+ N ++ ++ D + D T VLL
Sbjct: 139 RNTFPDILLSPHDYQTTIFGNEIDDEDDRMVNQMLNINDDQIHDSYVTDTITTTTEHVLL 198
Query: 338 RDAFEPTLMQ 367
++ F+ L Q
Sbjct: 199 QEVFQDPLFQ 208
>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1106
Score = 27.5 bits (58), Expect = 6.1
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +2
Query: 188 ASEIMAILSLGNDVDDIKERLANMVVALDKDGNAVTADDLGITGALLVLLRDAFEPTLMQ 367
ASE A L L N +D+KE L ++ KD + AD T L LL+ FEP +++
Sbjct: 128 ASESFAQLLLENLKNDMKENLETLI----KDAESNIADSK--TVELKGLLQQDFEPEVLE 181
Query: 368 T 370
+
Sbjct: 182 S 182
>At2g22480.1 68415.m02667 phosphofructokinase family protein similar
to phosphofructokinase [Amycolatopsis methanolica]
GI:17432243; contains Pfam profile PF00365:
Phosphofructokinase
Length = 537
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 65 PSNIMWNRVVDLNDRYLRKITIGQSPTEKG 154
PS+ W+ ++ NDR L K+ SPT G
Sbjct: 120 PSDEEWHGYINNNDRVLLKVISYSSPTSAG 149
>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 582
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -2
Query: 410 RMDQCEREPECPLRF 366
+M++CE++PE PLRF
Sbjct: 488 KMEKCEKKPEGPLRF 502
>At5g19680.1 68418.m02341 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 328
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 20 LTTEEKTKFARLNIDPSNIM----WNRVVDLNDRYLRKITIGQSPTEKGFTRETAFDISV 187
L+T +K + ID S + W+ + DL + LR + + P FT+ +DIS
Sbjct: 59 LSTLKKLSLRQNLIDDSAVEPLSHWDALSDLEELVLRDNKLAKVPDVSIFTKLLVYDISF 118
Query: 188 ASEIMAILSLGNDVDDIKE 244
+EI ++ + +KE
Sbjct: 119 -NEITSLEGISKASSTLKE 136
>At2g44940.1 68415.m05594 AP2 domain-containing transcription factor
TINY, putative similar to transcription factor TINY
(GI:1246403) [Arabidopsis thaliana]; contains pFAM
domain (PF00847)
Length = 295
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 318 PVIPKSSAVTAFPSLSRA-TTMLARRSFISSTSLPKDNIAMISDATDISKAVS 163
P + SS++TA SLS + TT + S +S + +DN + +S VS
Sbjct: 22 PAVSSSSSITASASLSSSPTTSSSSSSSTNSNFIEEDNSKRKASRRSLSSLVS 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,796,107
Number of Sequences: 28952
Number of extensions: 238570
Number of successful extensions: 696
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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