BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_K06 (611 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 98 1e-21 SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 31 0.099 SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 29 0.40 SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 0.70 SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 28 0.93 SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 28 1.2 SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 27 2.1 SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 4.9 SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 8.6 SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 8.6 >SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces pombe|chr 1|||Manual Length = 134 Score = 97.9 bits (233), Expect = 1e-21 Identities = 50/107 (46%), Positives = 63/107 (58%) Frame = +2 Query: 29 FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFRL 208 F RYVE GRV LV+ G GKL +VDI+D RALID P S RQ IR + LT + Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63 Query: 209 KYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQITDYQR 349 K P A + +V K W + KWA S WA+KL K+ R+Q+ D+ R Sbjct: 64 KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDR 110 >SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1261 Score = 31.5 bits (68), Expect = 0.099 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -2 Query: 187 ELVEANLLPRNTTAGTVNKCACLINDINYANQL 89 E+ E+ LLP + T GTV AC I D + A +L Sbjct: 951 EMKESGLLPTSVTYGTVINAACRIGDESLAEKL 983 >SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosaccharomyces pombe|chr 2|||Manual Length = 136 Score = 29.5 bits (63), Expect = 0.40 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +2 Query: 35 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 121 + ++PG+VAL++ G GK V ++ IDQ Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31 >SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosaccharomyces pombe|chr 3|||Manual Length = 136 Score = 28.7 bits (61), Expect = 0.70 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +2 Query: 35 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 121 + ++PG+VALV+ G GK V ++ +DQ Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31 >SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|Schizosaccharomyces pombe|chr 2|||Manual Length = 518 Score = 28.3 bits (60), Expect = 0.93 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +1 Query: 454 KSPKAQLKSYARRNP-TAKNQQRSNSFVPESSVK 552 K+ KAQL+S A++NP A Q S SF P ++ Sbjct: 446 KARKAQLQSMAQKNPLAASGLQSSLSFTPIQGIE 479 >SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein Cbp3|Schizosaccharomyces pombe|chr 3|||Manual Length = 283 Score = 27.9 bits (59), Expect = 1.2 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -3 Query: 153 PLPGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEP 4 P+ G SI + S +P N PSET+ P R K +T Q+P Sbjct: 18 PVWGKSIYGPLRRRFSFSPINVINHSPSETKRRDPVEELRYKPLTPPQDP 67 >SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe|chr 1|||Manual Length = 425 Score = 27.1 bits (57), Expect = 2.1 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +3 Query: 360 TSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSA 470 T +NR T+ F + A AG+FG+S P + Sbjct: 160 TGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGS 196 >SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1063 Score = 25.8 bits (54), Expect = 4.9 Identities = 10/42 (23%), Positives = 20/42 (47%) Frame = +2 Query: 14 EDVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALID 139 +D F +Y+ G++ L +D P K +G + ++ D Sbjct: 15 DDKFEFKKYINEGKLPLKADNPKKKPQLGTIQANQPIPSIFD 56 >SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1040 Score = 25.0 bits (52), Expect = 8.6 Identities = 9/29 (31%), Positives = 17/29 (58%) Frame = +2 Query: 272 EKWAKSQWAQKLANKEKRAQITDYQRIQA 358 ++WA S+ + + E R + YQ++QA Sbjct: 1003 KRWASSELFRLCRSVEHRESLNSYQKVQA 1031 >SPBC660.10 |||translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 813 Score = 25.0 bits (52), Expect = 8.6 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Frame = +2 Query: 53 RVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS-----GVSRQQIRLNQLHLTKF 202 ++ + SDG + K +G++DI+ Q L D + G Q++ + + H+ +F Sbjct: 182 QLPVYSDGLQERKFLGILDILQQKMILWDTSDNKLGTDGTHVQELPIPESHMERF 236 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,351,787 Number of Sequences: 5004 Number of extensions: 44547 Number of successful extensions: 160 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 160 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 267622334 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -